Gang037023.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY813002.1:85456736-85461155[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.73 92 5.1 0.6 5 23 476 495 470 495 0.88 2 18 0.0013 0.16 13.7 2.2 2 19 507 524 506 526 0.95 3 18 7.3 9.2e+02 1.9 1.0 2 23 539 560 539 560 0.84 4 18 0.14 17 7.4 0.6 2 23 568 590 567 590 0.94 5 18 0.026 3.3 9.6 0.9 3 23 598 618 596 618 0.95 6 18 4.2e-05 0.0054 18.4 0.9 1 23 625 648 625 648 0.96 7 18 0.027 3.3 9.6 6.0 3 21 657 675 657 677 0.95 8 18 1.5 1.8e+02 4.1 0.1 1 21 686 706 686 707 0.93 9 18 0.15 18 7.3 3.6 1 22 727 748 727 751 0.91 10 18 0.18 23 7.0 6.3 1 23 756 778 756 778 0.94 11 18 0.49 61 5.6 0.1 1 23 794 819 794 819 0.96 12 18 0.038 4.8 9.1 2.4 1 23 831 854 831 854 0.96 13 18 0.0013 0.16 13.7 3.0 2 23 860 882 859 882 0.94 14 18 0.056 7.1 8.6 0.8 2 23 886 908 885 908 0.96 15 18 2 2.6e+02 3.7 4.7 1 23 914 937 914 937 0.91 16 18 0.00025 0.031 16.0 0.2 1 23 942 964 942 964 0.98 17 18 4.9e-06 0.00062 21.3 2.3 1 23 970 992 970 992 0.98 18 18 1.2 1.5e+02 4.4 0.3 5 23 1008 1027 998 1027 0.86
Sequence Information
- Coding Sequence
- atggCGGTTAATGTTTCCAGAATCGTCAGTGTTTGTCTATATTGTAAAACGGACTCGGACAAAGATGCAGAAAAGGAATTTCACGAAATCTATGATGAAGTGGGCCAGGAGCTGCAACTACCCACCTTAGTGGAACAACTTTTTCGAATTAAACTGAAGGATGGGGAAAATAAACAGCTCTGTGAGGATTGTGTTAATCACCTTATAGAATTGTATGATTTAGAGGAGCATGCCAAAGAAAAAGGTGTTTCGCGAACATCCAAGCACTCAGACTTGGTAAAGCAGGATCTTGAAGAGAAAACAGCTGACTTACCCAATATCATTAGTAGTGACACAGAAAGTATTAGTGAAGAACATAGTGGTACATGTCTAAAAAAACAAAGTGATCCATTAACGCAGGAGCATGCAGTTCTGCCAAATAACATAAACCCAAATAATTCCCAACTTATGTTAAAAAACACAGACATCATTGATTAtagcagtttgaaaatttttcctctAGGGGATATTCAAGTTGATAATAATATTGTCGAAAGTTTCCCAGAGGAGGAGTTTGTTATTATATGTGAAAATGCAGAGTCTGAATTAAATGTAACAACTTCAAACAATATAATAGAAGTAACAAACGTTGGCGAAAATGAATTCGACGAACAGATTGAATTTGTGGAAGATGATGGAGACCAAGAtatggaaatagaaaatatgatttacacaaatactttaaatgaaaatgaagaatTGGAAATTACGAGACAAAGTCCAATGGAAAGCATTGGGAACAAGGGTGATCTGTTATCCGAAATCGATATCGAAACGACAGatagttcaaataattttatgaaagataTTGTGTATGAGGAAGAATTGGACAGAACTTTAATAGATAATGATAAAAACAATACTCCAAGTGTAGATAATCAGGAAGTTAATATGTTAGATGACTGTATCGATGATAGTTATTATGAAGAACACCAACCAATAGGTGATGAAGAGGATCGTTCGGATGATATGATGCTTGATGTGGAAAATGATAAGATAAGTTCAAATTCATCAgaagaaagtaaaaatattaaaaagacggTTACTGCAtcattcaatttaattgaacCGGATGCTTTATTCGACAGTGTTGAAGATATTGATTCTGGAAAAGTTATTGGAGATCAGGATGAAGTTTCACATGACGATTTATCATTGGAAGAAGAATATTTAATAGAAgaAATCAATTGTCCACAAGAGTATGATAAAGTTGATTTAAACGAGTACTTGGACAAAGTTTTAGCAACGAAATTTCAGGACTTGCAATTAAAATGGGAAACGAAATGTAAAttatGCCTTGACAAGTATGATACCTTTGAAGACTTATTAAAACATTCGTGTATAACTGAGTTTGAAGAGGAACAAGAATTTTGTTGTATACTTAAAGATtgtgaagaaaatataaaaaatttgtcgaCATTGGCGagacatttaataataaaacattatgaTAAACTGGAAAGCATTGCAATTTATGGTAAATGTCCAGATTgccaaaaaacattttcaactaTTACTGACTTCAACAAACATTCTTGCTGTCGAAGTATAAAACGAAAACCTGGCTCGCCAAATTATTGTCAATACTGCGATATGGACTTCCAATCTTTAAAGAGGTATGTTTTTCATATGCAATATCATTTCACAAATCGACGACCAAAGGTGTGCTTATTGTGTGgtgctttattcaaaaattcaaatgatttcTTTGAGCATACGCAATATCAACATATGCCCGAGACTTCCATGGCTTGTAGAAAatGTGATCGTTTCTTTAAGGAAAAAGAAGTGTATAACAGCCATATGGACTTGCATGAGGACTCAAAATATCAATATAGCTGCACGTTTTGTCCTaagaaatacacaaataaatctGGATTAAATCTACacattGATATTTATCACAACAACAAATCCAATGCTTTGTGGTGTAGTCATTGTGAAAAAGAATTTGTCAACAAGTCATCTTACCGTAATCATCTAAAATGTCATGCAAATATTGTTCAAGTGGATTCGTTTATATGTGCAACATGTGGTGTCATAACTAATAATTCGGAATTTATTAAGAGCCACATTAAATCTGATAAAGACTCGCCTTGCTTTTCATCGAGCGTAGATGGGAAGACTTTAGGTTTGGGTTTTACATGTGAAAACTGTTCTCTAGATTTTCATACAATTAAGCACCTACAAGCACACCGGTTAAGTAAAAGTCATAGTGATGACTTATTCTGCTGTGGGATATGTCGACAAAGTTTCAAAAGCCTACGTCATATGCGCAATCACTCCAGTAACCACAAGGATTTCAAAGAATGGCAGGAATCATTTCCAATATCTCGTTTTTTCGTCTGCAATATAGGTgaTTGTACAGAGTTCTATCCAATATGGGCCTCACTATACTACCATAAAAAACGACCGCATAAATCTAAAGAAAGCACGACTTCACCAGACAAATTTAAATGTCAATTTTGTCAGCAGCAGTGCTCTTCGAAAATGTCTCTGGCTGTACACGTCGCTAGGAGTCATAATAATTcaaacGTTAAATGCTCACACTGCAAACGAGGTTtcaattctcaaaaaaaattacaggagCATATTGATTATTTCCACACACCGGTAAAATGTGACATTTGCattagaaaattgaaaaaccGTAGGAATTTAGAATCACACAAAAACATGGTACATCTTAATATTAAACGTTATTTTTGCAAACATTGCGAAAAAGGATATTTTCATAGAAGTGAAAGGGATACACATGAAATCAAAGTACATCCTGAAGTTTCATATAAATGTGAAGTATGCAATTTCACAACTAATTATCCAGAATCTTTGGAAATTCATATGGATATGCATAATAatcagttaaaatttaaatgcacaATATGTGGCAAAAGTTTTGGCCGAAAACAACTCTTAACGTCTCACTCAAAGAGACATCTTAATAAAAAAGACTTTTCTTGTGccaaatatttgaatgaaagcGGTTGTGATGGAACTTTTTTGACTTACAATCTCTTGAAAAGACATATTCAAAGTAAACATCCAAACTCaagttataatattaatatgcagAGAGACGAAGAACGAAAAAAAGCGCTTAACAAATGTCCTGAAACTgatcaaatagaaaatatttcatatgaaatcttACGATCTGACGATGGCAGTATTAGCGATACAGAATTTCAACGAGATGCCATTGAAATGGTTTTGGAAAATGATGAGGAGTTTGATgggatataa
- Protein Sequence
- MAVNVSRIVSVCLYCKTDSDKDAEKEFHEIYDEVGQELQLPTLVEQLFRIKLKDGENKQLCEDCVNHLIELYDLEEHAKEKGVSRTSKHSDLVKQDLEEKTADLPNIISSDTESISEEHSGTCLKKQSDPLTQEHAVLPNNINPNNSQLMLKNTDIIDYSSLKIFPLGDIQVDNNIVESFPEEEFVIICENAESELNVTTSNNIIEVTNVGENEFDEQIEFVEDDGDQDMEIENMIYTNTLNENEELEITRQSPMESIGNKGDLLSEIDIETTDSSNNFMKDIVYEEELDRTLIDNDKNNTPSVDNQEVNMLDDCIDDSYYEEHQPIGDEEDRSDDMMLDVENDKISSNSSEESKNIKKTVTASFNLIEPDALFDSVEDIDSGKVIGDQDEVSHDDLSLEEEYLIEEINCPQEYDKVDLNEYLDKVLATKFQDLQLKWETKCKLCLDKYDTFEDLLKHSCITEFEEEQEFCCILKDCEENIKNLSTLARHLIIKHYDKLESIAIYGKCPDCQKTFSTITDFNKHSCCRSIKRKPGSPNYCQYCDMDFQSLKRYVFHMQYHFTNRRPKVCLLCGALFKNSNDFFEHTQYQHMPETSMACRKCDRFFKEKEVYNSHMDLHEDSKYQYSCTFCPKKYTNKSGLNLHIDIYHNNKSNALWCSHCEKEFVNKSSYRNHLKCHANIVQVDSFICATCGVITNNSEFIKSHIKSDKDSPCFSSSVDGKTLGLGFTCENCSLDFHTIKHLQAHRLSKSHSDDLFCCGICRQSFKSLRHMRNHSSNHKDFKEWQESFPISRFFVCNIGDCTEFYPIWASLYYHKKRPHKSKESTTSPDKFKCQFCQQQCSSKMSLAVHVARSHNNSNVKCSHCKRGFNSQKKLQEHIDYFHTPVKCDICIRKLKNRRNLESHKNMVHLNIKRYFCKHCEKGYFHRSERDTHEIKVHPEVSYKCEVCNFTTNYPESLEIHMDMHNNQLKFKCTICGKSFGRKQLLTSHSKRHLNKKDFSCAKYLNESGCDGTFLTYNLLKRHIQSKHPNSSYNINMQRDEERKKALNKCPETDQIENISYEILRSDDGSISDTEFQRDAIEMVLENDEEFDGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -