Gang025817.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY813001.1:16228005-16231168[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1.7e+02 4.3 0.0 2 23 220 241 219 241 0.95 2 12 7.6 9.6e+02 1.9 10.3 1 23 247 270 247 270 0.96 3 12 0.028 3.5 9.5 0.2 3 23 286 307 285 307 0.95 4 12 0.0033 0.41 12.5 0.8 1 21 355 375 355 376 0.96 5 12 0.025 3.2 9.6 1.7 2 23 409 429 408 429 0.96 6 12 0.0028 0.35 12.7 5.0 1 23 445 467 445 468 0.93 7 12 0.00039 0.049 15.4 0.2 1 23 476 499 476 499 0.96 8 12 0.00025 0.031 16.0 0.4 3 23 506 526 505 526 0.97 9 12 1.5e-06 0.00019 23.0 0.8 2 23 532 553 531 553 0.97 10 12 0.0054 0.68 11.8 2.2 1 23 559 581 559 581 0.98 11 12 0.0022 0.28 13.0 3.1 1 23 586 608 586 608 0.94 12 12 0.46 58 5.7 5.5 1 23 613 637 613 638 0.95
Sequence Information
- Coding Sequence
- atgaaacaacGTTGTCGTTGCTGTTTAACAACAAGTTCCGATAATTTTTTCGATCTTTTCCAACAACATAAATCTGGGATATCCTTCGCAGACAATATACGCGTATTAGCTGAAGTACAAATAGACCAAAACGATGGTTTAGCTCaacaaatatgtttaaattgttataatgaATTACACCGCATATACGAATTCTGCTTAAAAATACGACAAGCTGACAGAAAACTAAGAAATGAATTGGAAGTTGCTAAGGCACAAATAGATGATGAGGTTCGAATGGAAAATATACAATTACTGGATAGTGAATATTTCGCTCCGGTGGATGACAATGGCATACAAGTGTGTGTCATGGAGGAAATACTGGAGCAGGAGAATGACCAAGAAAATGTTCTTATAGTTGAGGAAATTAATGATATTGAGGAAATTAATATTGTAGAAGAACTATCAGATTCCGTAAAAGAGCAAGGAGATGGAAAGTACAATTTGAAAGATAATTTATTGGAAGGCCTGGCTTTGGTAGCAGCTACTCAGGAAAATGTAAATATCGATAAGGAAAGTATTGTTATTGAAAGCTATCTTCCGGAGGATGAGAATGATGAAGACTACCTAATAGTATTTGATCCCAGCGAAACTATCAGCCTGAAACCCCAAAAATGGAAATGTGGAGAGTGCAAAGTAGTATTGCGCGGCGATGTATCTTATGAGGGTCATATGAATGTGCATAGGCAAGTTAGGCCACATACATGTCATCAGTGTAAGACTAAGTATAGATGTCGCAATGCCCTTAAAcgacataaaaacattaaacattctTCATCCATTCAAAATACAGAGACCACGAAAAAGTCACTCTTATGCTTGATATGTCagaaaacctttttttctgaaattacaTTATATCTACATCAAGCTGTCATTCACTCCCAAGGTGATAAATGCCCGTTTGAATGTAACGACCcaagtgaaaataatttaaaagaacatTTACAATATACCCatgaaaaagaaatactttGTGCTGCAGAAACATTTTGGTCTAATGATCTCAATATACCAACTGCGTAtcaatgttttaaatgttccgaaacatttgaaaaagaaaagctGTTACAGGATCACCTCAAATTATGTCAAACAATggatatagaaaaattacagcATGATGTCTTcaagaatgaaaatattatagaaattgtCAAAGTGGAAGAATCTGAGATATCCATGCAATGCAATGTTTGTCAAAAGAAACTTCTCAAAAGGAACTTGAATAAGCATATGGAATTGCACAAAcgtaaagaagaagaaaacaaagttttgGAAGATCCCAAATTATATTTGTGCTCGTTTTGCCCccgtgaatttaaaaattccaaatcgCTCCACCAGCACGAAAAAATCCATCATGGCGAGAGTTCCGATATGGTGTATGTCTGTGCAGATTGTGAGCGTCAATATGCTTCGCAATATCTGTTGGAAACACACCGTAAACAAGCACATAAAGAGCGTGATAATATATGTAAGATATGTGGTAATGCTTTCAAGTTGAGAAATCAACTTGTGAATCATATGAAATTGCATTTGGAAAAGAATATACCTTGCCCACACTGTGATAAGAAATATGCCAgacaatttgatttaaatgttCATCTGAGATCGCATACTGGCGAACAGCCATACGCCTGTCATTTGTGTGAAAAACGATTTGCAATTAAAGTGCGCCTAACATATCATCTGCAAAAGCATTATGGCGTTAAACACTATTGCAAAGAATGTGGTGctgaatttaattcaaaacagaAGCTAAAAGCGCATTCATTTAAACACACAGGCATGCCTTATCGGTGCCAGATGTGCGATTATCATGGTTTTGCAACCCGCAATacgtTTAAACGTCACTTAACTCGCGTCCATCATACCTCTATATCCGAAGAGGCACTTAATGAAATGTTTCGAAAGAATACTGGAAAAAGTGTTAGCATAAAACAGATTGATGAGCAAAATCTTGTACTGACCGCCAGCGAAGACGACAATCAGGAAGAAATAGAAGTATTGGGAAAATGA
- Protein Sequence
- MKQRCRCCLTTSSDNFFDLFQQHKSGISFADNIRVLAEVQIDQNDGLAQQICLNCYNELHRIYEFCLKIRQADRKLRNELEVAKAQIDDEVRMENIQLLDSEYFAPVDDNGIQVCVMEEILEQENDQENVLIVEEINDIEEINIVEELSDSVKEQGDGKYNLKDNLLEGLALVAATQENVNIDKESIVIESYLPEDENDEDYLIVFDPSETISLKPQKWKCGECKVVLRGDVSYEGHMNVHRQVRPHTCHQCKTKYRCRNALKRHKNIKHSSSIQNTETTKKSLLCLICQKTFFSEITLYLHQAVIHSQGDKCPFECNDPSENNLKEHLQYTHEKEILCAAETFWSNDLNIPTAYQCFKCSETFEKEKLLQDHLKLCQTMDIEKLQHDVFKNENIIEIVKVEESEISMQCNVCQKKLLKRNLNKHMELHKRKEEENKVLEDPKLYLCSFCPREFKNSKSLHQHEKIHHGESSDMVYVCADCERQYASQYLLETHRKQAHKERDNICKICGNAFKLRNQLVNHMKLHLEKNIPCPHCDKKYARQFDLNVHLRSHTGEQPYACHLCEKRFAIKVRLTYHLQKHYGVKHYCKECGAEFNSKQKLKAHSFKHTGMPYRCQMCDYHGFATRNTFKRHLTRVHHTSISEEALNEMFRKNTGKSVSIKQIDEQNLVLTASEDDNQEEIEVLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -