Basic Information

Insect: Germaria angustata
Gene Symbol: -
Assembly: GCA_963681545.1
Location: OY812999.1:95187525-95189760[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00044 0.056 15.2 1.9 1 23 355 378 355 378 0.97

2 8 0.0021 0.27 13.0 4.3 2 23 394 415 393 415 0.97

3 8 0.00031 0.04 15.7 0.2 3 23 426 447 424 448 0.93

4 8 0.00021 0.026 16.2 0.3 1 23 453 475 453 475 0.97

5 8 6e-05 0.0075 17.9 3.4 1 23 481 503 481 503 0.97

6 8 0.00047 0.059 15.1 0.4 1 23 508 530 508 530 0.98

7 8 1.7e-05 0.0021 19.7 1.0 1 23 536 558 536 558 0.97

8 8 0.0016 0.2 13.4 5.0 1 23 564 587 564 587 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00044	0.056	15.2	1.9	1	23	355	378	355	378	0.97
2	8	0.0021	0.27	13.0	4.3	2	23	394	415	393	415	0.97
3	8	0.00031	0.04	15.7	0.2	3	23	426	447	424	448	0.93
4	8	0.00021	0.026	16.2	0.3	1	23	453	475	453	475	0.97
5	8	6e-05	0.0075	17.9	3.4	1	23	481	503	481	503	0.97
6	8	0.00047	0.059	15.1	0.4	1	23	508	530	508	530	0.98
7	8	1.7e-05	0.0021	19.7	1.0	1	23	536	558	536	558	0.97
8	8	0.0016	0.2	13.4	5.0	1	23	564	587	564	587	0.97

Sequence Information

Coding Sequence: ATGGTAGCTAAACATAAAAGGGCAAATAGCTATGAGAACCAGGATGACGacatacaaacaaaatggtTGAGTTGGTGTCGCTTGTGTGCCAAACGTGAACTAAATGGGCAAGAAAACTCAtccatttttgttaaaaatgaatCTGGTAAACTGGACTCGGAACTGGCCACCTCAATTGGAAAATACTTTTGGGTTAATATAAAAGTTGACGATGCGATATCACAGTGCTTGTGCCTGGAATGCAAACAGCTTGTAGAAGAGCTGGTAACATTCACAGAACGTGTCAATAAAGTACAAACATTATTTTGcttgttacaaaatattaaacccACAACCGTAGAAGAGGCCGATACTTTGCGTACACAATGTGGACTAATCGATGAAAATTGGCAGCATATAATAAAACCTCAGTCGTCAAATATTGAGGAAACCCTAAAACCTTTCTTAATTGATCAAGAAACACAAACAGATTTAATACCTACGTCAGAGTGTGCAAAGGCACAACACGAAGAAGTCCAAACTACCGTAGAAGCAGAAGAAATAATAGAGATCCTCACGAAACCAGATAAAAATGATGACTTTGATAGTCAAACTGGAACTGAGGTCGACAACGTGTATGAGTATGTTGTGCATGGCGATAGCGAAATGGAATTTTTGGAAAACGGCGAATATGCAGTACGCTCTATTAATGTAAGTAGTGACGATAATAAGCCGAACGGACCAGAAACTTTTGAAGATGAAGAAGTTCAAGACAGTGATCTTTTCAAAGAACTTAAATTCAAAGCAGATATCGAAGAAGATGACCAAAAACACAcggaaacttttaaaattatttctaaagagGACGAAGTAGAGATTGAGTATCAAGAATCTGCTCAATCTTTACAACAGGAAGATGAGGGAGAAATTGAAATGCTGGAGGAGGAAGAGGATGAGGACGATTATATAAATACAAGCGAAACTCAGAATGAAACTAAAATCGAGTCATTAGTGCTACAAAAAGGCAAAAGAGGGCGACCGTTTGGTGCAAAGAACTCTGAATCCTATAATTCCCCCTACCGTTATGAGTGTAAGGAGTGCAAACGTACGTATAAAAATCCTAACATCTTTCGAAGACACATGAGTTCTTTGCACAATGTCCTTGTTGATGAGTTGCCTGATTTCAAATCCATGTCTACCACATGTACAGTCTGCAATAGGCAGTTTTTAACGCGAAGTAGCTTAAAATTGCACATGAGACATCACTTGcctgatgaagaaaaatacaatatagCTTGCCCATATTGTGGTCGTAAGTTTTCACAAATAGGAGCCATGCGGCAACATGTAAATGGCATACATCATCAGATGAAACCATTTATATGTGACCAATGTGGACGAGCCTGCAAAACAATGGCAGCCCTAACCGAACATCAACTGGTTCACACCAACGAGTGTCCGTTTGAATGTGAATCATGtcataaaagatttaaaaataaagctaGACTTAAGTCCCATATGGATATACATAACAAATCGGTGTATACATGTTCAGATTGTGGGTTGGAGTTGAATACGAAACGAACTTTATTGCAACATCGCCTGGTGCATAGTGATGTCAAGCGTTTTAAGTGTGAATTTTGTGATGCAGCCTTTAAAAGatcaaaatctttgaaaaatcaCCTAATACTGCATTCGGGTTTGAGACCTTATAAATGCAATTTCtgtaataaatcattttcaaacgGTTCAAATTGCAGGGCTCACAAGAAGAGAGCCCATCCTAAAGAATTGGCAGAAGAGGAAGCTAATGGGAAAGAACGGGAACGGGTGCCTATACCAAAATTAGAAGAACTAAAATCTGCcAAAGGAATTTTAGTCCAGCCGCGTAAAATTAAACGGCATACAGGGGGCCTATCACACCAGTTGCGTAAACTCTTGGGATCATCTGAAAAAACTAAACAAGAAAGTAGtactaataattttgaaaatacggCTGAAAACTACGAAACGTTATCAGATATTCACTATGAGGTTTGCAAGTCAGATATTGACGAAACGGAGTCATTGGTCGATAACCACAATGAGGAATGCGAAGAAACCGTTATATATGAAATCAttgatgaaatttaa
Protein Sequence: MVAKHKRANSYENQDDDIQTKWLSWCRLCAKRELNGQENSSIFVKNESGKLDSELATSIGKYFWVNIKVDDAISQCLCLECKQLVEELVTFTERVNKVQTLFCLLQNIKPTTVEEADTLRTQCGLIDENWQHIIKPQSSNIEETLKPFLIDQETQTDLIPTSECAKAQHEEVQTTVEAEEIIEILTKPDKNDDFDSQTGTEVDNVYEYVVHGDSEMEFLENGEYAVRSINVSSDDNKPNGPETFEDEEVQDSDLFKELKFKADIEEDDQKHTETFKIISKEDEVEIEYQESAQSLQQEDEGEIEMLEEEEDEDDYINTSETQNETKIESLVLQKGKRGRPFGAKNSESYNSPYRYECKECKRTYKNPNIFRRHMSSLHNVLVDELPDFKSMSTTCTVCNRQFLTRSSLKLHMRHHLPDEEKYNIACPYCGRKFSQIGAMRQHVNGIHHQMKPFICDQCGRACKTMAALTEHQLVHTNECPFECESCHKRFKNKARLKSHMDIHNKSVYTCSDCGLELNTKRTLLQHRLVHSDVKRFKCEFCDAAFKRSKSLKNHLILHSGLRPYKCNFCNKSFSNGSNCRAHKKRAHPKELAEEEANGKERERVPIPKLEELKSAKGILVQPRKIKRHTGGLSHQLRKLLGSSEKTKQESSTNNFENTAENYETLSDIHYEVCKSDIDETESLVDNHNEECEETVIYEIIDEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -