Basic Information

Insect: Germaria angustata
Gene Symbol: -
Assembly: GCA_963681545.1
Location: OY813001.1:91478011-91482318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00038 0.048 15.4 2.5 2 23 189 211 188 215 0.97

2 15 0.0031 0.39 12.5 2.2 1 22 217 238 217 239 0.91

3 15 4.5e-05 0.0057 18.3 2.0 1 21 245 265 245 267 0.95

4 15 0.0089 1.1 11.1 3.5 1 23 273 295 273 295 0.96

5 15 0.04 5.1 9.0 2.7 2 23 302 323 301 323 0.97

6 15 8.4e-05 0.011 17.5 1.9 1 23 353 375 353 375 0.98

7 15 0.11 14 7.6 4.2 1 21 381 401 381 404 0.95

8 15 0.00023 0.028 16.1 0.8 2 23 498 520 498 520 0.96

9 15 0.00011 0.013 17.1 0.9 1 23 526 548 526 548 0.99

10 15 2.2e-05 0.0028 19.3 0.6 1 23 554 576 554 576 0.98

11 15 7.7e-07 9.6e-05 23.9 2.0 3 23 584 604 582 604 0.96

12 15 0.014 1.7 10.5 3.7 1 23 610 632 610 632 0.98

13 15 0.0001 0.013 17.2 0.1 1 23 637 659 637 659 0.99

14 15 0.0061 0.76 11.6 8.3 1 23 665 687 665 687 0.97

15 15 0.057 7.2 8.5 7.4 1 23 693 716 693 716 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00038	0.048	15.4	2.5	2	23	189	211	188	215	0.97
2	15	0.0031	0.39	12.5	2.2	1	22	217	238	217	239	0.91
3	15	4.5e-05	0.0057	18.3	2.0	1	21	245	265	245	267	0.95
4	15	0.0089	1.1	11.1	3.5	1	23	273	295	273	295	0.96
5	15	0.04	5.1	9.0	2.7	2	23	302	323	301	323	0.97
6	15	8.4e-05	0.011	17.5	1.9	1	23	353	375	353	375	0.98
7	15	0.11	14	7.6	4.2	1	21	381	401	381	404	0.95
8	15	0.00023	0.028	16.1	0.8	2	23	498	520	498	520	0.96
9	15	0.00011	0.013	17.1	0.9	1	23	526	548	526	548	0.99
10	15	2.2e-05	0.0028	19.3	0.6	1	23	554	576	554	576	0.98
11	15	7.7e-07	9.6e-05	23.9	2.0	3	23	584	604	582	604	0.96
12	15	0.014	1.7	10.5	3.7	1	23	610	632	610	632	0.98
13	15	0.0001	0.013	17.2	0.1	1	23	637	659	637	659	0.99
14	15	0.0061	0.76	11.6	8.3	1	23	665	687	665	687	0.97
15	15	0.057	7.2	8.5	7.4	1	23	693	716	693	716	0.97

Sequence Information

Coding Sequence: ATGATTATGGATTCCACCATATGTGTAACGTGTCTTTGTGAACCTTCTAAAGCACACAATCTAAATGAAGTAATATTAGAAAATCTACGAATACTAGAAATACTTCACCAGTTAGTGCCATTGTTTTTGGACGAAAAAGACTTCAAACATCCTGACACAATTTGTGGTAAATGTTTGGAAAAACTTATCACGTCTTTCAAGTTTCAAAGGCAGTGTTTGGATTCTATAAGAAATTTGCATAAACAATGgtcggaaaaaaaattaaataaacaaaagcagCAGCAAAGAGAGTCTCAGCTGAAGTTGAGAGCTGAGAAAGAAAGCACACTGGAATCTCTACCTGAAATCAAGGATGATTCAAAAATGTCATTTGATGAAATTGCAATTGATCCCTTGACACCCAGTAAAGAAGATCTGTTACTATTTGTGCAACATGATAACCCGAAAGAAGAAAATCATGAGGAAAATGCTAAAGATGACTTAAGTGGTAGTTTACAATGTAATGAAAacagcaacaaaaacttGGACGAAAAATCTCATTCAGAGGCATCAGTTGttccaaataaatgtaaactttgtagtaaaatatttaaacaacctCAAGGTTTAGCATCGCACATgtcaaaaacacatttaaaaaaacacttataCCAATGTCGAAAATGTGGCAAAGGCTTTAGTGTGGAAGAACTCTTCATACGACACTGTAATCTCCATTTAGGAATCAAGCCGTTTCCTTGCACTCAATGTGATAAAGCATTCGATACTAAAGGCACTTTAAATCAGCACATGCTTTGTCATTCTAAAGAGTATTCTTATTTATGTACTATTTGTGGTAAGAAGTTTCACCGCATTGATGTTTACAAACAACATAAGCAACGCCATGAGGACGGCGAACTTCTCCAATGTTTGAAatgtgatataaattttaagtcatTCTCTGACCATATAAAACACATTAAGTCACATAAAACTGAAAACTTTTATGATGatgaaaattgcaacaaaaacttATCAACATTCAATCAAAAAGATAAGCATGCGGACGAGAAACCCTTTAAATGTGATGAATGTGATaaagaatttttttctatgcCAAACTTGAAACTTCATAAAAAAAGGCATGCCAGAAAGAAACGTTATAAATGTTTATCATGTTCGGAGTCATTTTGCGAAAGCGTAGAGCTGGAGAAGCATACAAAATGTATACACGAAGAAAACaaatgtaaaagtaataaaGCGAAGGACTCTCTAAGTGAAAACGAAATTCTAGAAATGCCTTTGGAGCAAATATTGACAGAATTTAAACCTGAAAATAAGGAAGGCACTGGTATTCCAATATATTCTGAAAAAATAGAGAACAAAGAAATATGTAATGTAAAAATAGAGAAGAGTGAAAGCGGAACTGAAAATGAATTTCCCATACATCAGAACACTAATGTCTATAATGTCAAAGATCAACAGAATAACGAGTCAGCAACTGAATCAGCTCAGTGCGATTTGTGTaatcaagtatttaaaaattctcaagGATTAGCTAGGCATAGGTCTAGCACACATTTTAAGAAGCACTTATACCAATGTGATCAGTGTGATAGGGGCTTTAGTGTAGAAGAATACTATATTAAACATCGTAATCGTCATTTAGGTATAAAAACCTTCAAATGTAAACAATGTGGCAAAGCTTTTGAAACTAATAGTATTCTCAACCAACATTTAATTTCACATTCTAAATTAACTCCACATTTATGTACAATTTGTGGCAAAAGTTTTCGCCGCCTTGATGGTTTAAGGCAGCATATGCTTCGACATGGAGACGAAAGGCCGTTTAAATGTTCAGTATGTTCTAAAAGTTTCAAATGTCTGTCTgataaattaaaacacatgaTTATACATGATGAAAAACGTTATGAGTGCAATATTTGTGGTTCACGCTTAGCTACTCCCGAGTCCCTTTCGCAACATCAAATGACACATACCGGCGAAAAACCTTTCAAATGTAGTCATTGTGACAAATGCTTTATCTCCTTGTCTAATATGAGATGTCATGAGAGAATACATACAGGCGAAAAACCTTATAGGTGTCAATACTGTTGCAAATCATTTCGGCAAAGCAATGATCGTAAAAAACATACCAATCGTATGCATAAGAATGAAGTGGTTAATACGAAATctgaggaaaattaa
Protein Sequence: MIMDSTICVTCLCEPSKAHNLNEVILENLRILEILHQLVPLFLDEKDFKHPDTICGKCLEKLITSFKFQRQCLDSIRNLHKQWSEKKLNKQKQQQRESQLKLRAEKESTLESLPEIKDDSKMSFDEIAIDPLTPSKEDLLLFVQHDNPKEENHEENAKDDLSGSLQCNENSNKNLDEKSHSEASVVPNKCKLCSKIFKQPQGLASHMSKTHLKKHLYQCRKCGKGFSVEELFIRHCNLHLGIKPFPCTQCDKAFDTKGTLNQHMLCHSKEYSYLCTICGKKFHRIDVYKQHKQRHEDGELLQCLKCDINFKSFSDHIKHIKSHKTENFYDDENCNKNLSTFNQKDKHADEKPFKCDECDKEFFSMPNLKLHKKRHARKKRYKCLSCSESFCESVELEKHTKCIHEENKCKSNKAKDSLSENEILEMPLEQILTEFKPENKEGTGIPIYSEKIENKEICNVKIEKSESGTENEFPIHQNTNVYNVKDQQNNESATESAQCDLCNQVFKNSQGLARHRSSTHFKKHLYQCDQCDRGFSVEEYYIKHRNRHLGIKTFKCKQCGKAFETNSILNQHLISHSKLTPHLCTICGKSFRRLDGLRQHMLRHGDERPFKCSVCSKSFKCLSDKLKHMIIHDEKRYECNICGSRLATPESLSQHQMTHTGEKPFKCSHCDKCFISLSNMRCHERIHTGEKPYRCQYCCKSFRQSNDRKKHTNRMHKNEVVNTKSEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -