Basic Information

Insect: Germaria angustata
Gene Symbol: -
Assembly: GCA_963681545.1
Location: OY813001.1:14295012-14304033[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.8e-05 0.0086 17.7 1.9 2 23 230 252 229 252 0.96

2 14 0.00014 0.018 16.7 0.5 2 23 263 285 263 285 0.97

3 14 0.0021 0.26 13.1 4.6 1 23 291 313 291 313 0.98

4 14 0.00019 0.024 16.3 1.8 1 23 319 341 319 341 0.95

5 14 0.019 2.3 10.1 0.3 3 23 349 369 348 369 0.98

6 14 0.00035 0.044 15.5 1.0 2 23 375 397 374 397 0.94

7 14 0.00054 0.068 14.9 2.6 1 23 403 425 403 426 0.96

8 14 0.0018 0.23 13.3 1.0 2 23 525 547 524 547 0.94

9 14 0.00022 0.027 16.2 0.1 2 23 557 579 556 579 0.97

10 14 0.00031 0.039 15.7 3.8 1 23 585 607 585 607 0.98

11 14 0.0001 0.013 17.2 0.7 1 23 613 635 613 635 0.95

12 14 0.0032 0.41 12.5 0.2 3 23 643 663 642 663 0.98

13 14 0.0011 0.14 13.9 0.2 2 23 669 691 668 691 0.94

14 14 0.0054 0.68 11.8 3.1 1 23 697 719 697 720 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.8e-05	0.0086	17.7	1.9	2	23	230	252	229	252	0.96
2	14	0.00014	0.018	16.7	0.5	2	23	263	285	263	285	0.97
3	14	0.0021	0.26	13.1	4.6	1	23	291	313	291	313	0.98
4	14	0.00019	0.024	16.3	1.8	1	23	319	341	319	341	0.95
5	14	0.019	2.3	10.1	0.3	3	23	349	369	348	369	0.98
6	14	0.00035	0.044	15.5	1.0	2	23	375	397	374	397	0.94
7	14	0.00054	0.068	14.9	2.6	1	23	403	425	403	426	0.96
8	14	0.0018	0.23	13.3	1.0	2	23	525	547	524	547	0.94
9	14	0.00022	0.027	16.2	0.1	2	23	557	579	556	579	0.97
10	14	0.00031	0.039	15.7	3.8	1	23	585	607	585	607	0.98
11	14	0.0001	0.013	17.2	0.7	1	23	613	635	613	635	0.95
12	14	0.0032	0.41	12.5	0.2	3	23	643	663	642	663	0.98
13	14	0.0011	0.14	13.9	0.2	2	23	669	691	668	691	0.94
14	14	0.0054	0.68	11.8	3.1	1	23	697	719	697	720	0.96

Sequence Information

Coding Sequence: ATGGCTGCAGATATTCAAAGTGATTGTTTAATAAACGGAATTCAGTACAAATGTCGTACGTGCTTTGATCCTGGGCGAACTATTTACTCCCTCACAGAAGAGGCTAGTAATATGAAAACTTGGCGTGAAGTGATAAAGGATATTGCTCAACTACAGATAAATGATGATGAGATTCTACCAAAGACCTTGTGCTGCAAGTGCttggaaaaacttaaaaaatcgtACGATTTCGTATTGCAAATccaaaatgtgaataaaaagtACTCGGAATTACTGTCAAAGGAGGAAGTTTCAATTGAATCAGATAGTTTTAACGATTGTTTGGCAGAATCAGCTATTGCTTTGCCTTTGGAAGAATTTATCCCAGAAATTAAGGTAGAAGATGAAATGGCGATTTCATATAATATCGACATGAGTAACAACAAATTAGAAGATAATGATGAAGATAATGATGATCCTTTCACGGAAACGATTGATGATGAAGTAGACTTACAAGCTTCAGAGCAATTGGAAGAGAACGAAAGtgcaaTAGCAATAACTggaaaaacaacagcaaagcGAAATCGTCGTAAACAAATAGGAGTATACGTAAAATTGTTACGCAGCAACGTGAAACGGACTAGAAAAGTTAAGCAAACTGATGAAATTATAAGTACTGATGATTGTGGATTGAAAGAGCCAGCCATTGTTTGCGGTATATGTACGCGAAGCTTTTTTACCAAACACGCATATCAAAGGCACCAGCAAACAGAACATTCTTCAGAAGAATCAAATGAGGAGAGGAATAGATGTCCAATATGTTCCAAAAAATttcgcaataaattttatgtagttGACCATATAAAAGTTGTCCACGACAAACTAAGACCATTTAAATGTTCCCACTGTACGAAATGTTTTGCATCGGCCGCTTCCAAAAGAATTCATGAACTAACACACACGGATAATTTTCCCTACGCCTGCGAGCATTGCGATAGACGTTTTCGCCTTtccagtaaattaaaaattcattcagaAATACATACAACTAAGCCTGAACTTCTATGTCCCATATGTAAAAGGAGTCAAAAATCACAAGAAGAATTGGAACTACATGTAAAAAATCACGATGATAATCGTTTACAGTGCCCATCCTGCGGTCATCTATTTAGAAAAAGATCAAACCTTAATGATCATTACAATGCCGTTCATTTGAAGCTACGTCCTTATAAATGTGAAATTTGTGAACTAAGTTTTGGTGATCGGAAAACGCGACGCGTGCACCAAAGAAGTCATCATAAGAAAGACCCTTCCATATCGATcgcttttaaagaattttacacCAAATTTGTCAAACTTCAATTACACTTAAATATAAAtgcaaaaacaaaatgtggAGAAAGTACAGCAAAACGTAATCgtggcaaaaaagtgaaaaaatcagttGAAAGTGAAGAATTGAAACGTAGTCCAGTTAAACGTCCGAAAAAAGCTAAACAACCAAAGAAAAACGCAAAAACATCGCACACTGACGAATTAAATGAACTGAAAAGTACTCCTATTAATGAAGACGATGACGGAAAAGAAACGATCGTTTGCGATAAATGTTCGCAAACATTTCCCACTATTCACACATATCAAAGACACCAACAGGCAGAACATTCTTCAGAATCAAATGAAGAGAAAAACAAGTGCCCGATATGTTCAAAAGAATTTAGAAATAGTTGGTATGTAGTGGATCATATAAAGGTTGTTCACGATAAATTGAAGCCCTATAAGTGCTCTCACTGCCCAAAAAGCTTTGCATCAGCCCATTCCAAACGAATTCACGAACTAACACACACGGATAATTTTCCCTATGCATGCGAATATTGCGACAGACGTTTTCGCCTTTCCAGTAAATTAAAGATTCATTCAGAAATACATACAACTAAGCCCGAACTCCTATGTCCCATTTGCAAGAGAAGCCAAAAGTCGCAGGAAGAACTAgaagtacatataaaaaatcacgACGACAATCGTTTACAATGTCCTTCGTGCGGTAACCTATTCAGAAGAAATGCACAACTTAAAGATCATTACAATGCAGTTCACTTGAAATTGCGTCCGTACAAATGTGAATTTTGTGAATTGGGTTTTGGCGACCGCAAAACGCGGCGTGTGCATCAAAGAACACACCATAAACAAGAGCTTTCAATATCGTGA
Protein Sequence: MAADIQSDCLINGIQYKCRTCFDPGRTIYSLTEEASNMKTWREVIKDIAQLQINDDEILPKTLCCKCLEKLKKSYDFVLQIQNVNKKYSELLSKEEVSIESDSFNDCLAESAIALPLEEFIPEIKVEDEMAISYNIDMSNNKLEDNDEDNDDPFTETIDDEVDLQASEQLEENESAIAITGKTTAKRNRRKQIGVYVKLLRSNVKRTRKVKQTDEIISTDDCGLKEPAIVCGICTRSFFTKHAYQRHQQTEHSSEESNEERNRCPICSKKFRNKFYVVDHIKVVHDKLRPFKCSHCTKCFASAASKRIHELTHTDNFPYACEHCDRRFRLSSKLKIHSEIHTTKPELLCPICKRSQKSQEELELHVKNHDDNRLQCPSCGHLFRKRSNLNDHYNAVHLKLRPYKCEICELSFGDRKTRRVHQRSHHKKDPSISIAFKEFYTKFVKLQLHLNINAKTKCGESTAKRNRGKKVKKSVESEELKRSPVKRPKKAKQPKKNAKTSHTDELNELKSTPINEDDDGKETIVCDKCSQTFPTIHTYQRHQQAEHSSESNEEKNKCPICSKEFRNSWYVVDHIKVVHDKLKPYKCSHCPKSFASAHSKRIHELTHTDNFPYACEYCDRRFRLSSKLKIHSEIHTTKPELLCPICKRSQKSQEELEVHIKNHDDNRLQCPSCGNLFRRNAQLKDHYNAVHLKLRPYKCEFCELGFGDRKTRRVHQRTHHKQELSIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -