Basic Information

Insect: Germaria angustata
Gene Symbol: -
Assembly: GCA_963681545.1
Location: OY813001.1:10238003-10244724[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.8e-05 0.0073 18.0 3.5 1 23 212 234 212 234 0.98

2 10 2e-06 0.00025 22.6 0.5 1 23 244 266 244 266 0.97

3 10 2.7e-05 0.0034 19.0 3.0 1 23 273 295 273 295 0.98

4 10 1.9e-05 0.0024 19.5 0.6 2 23 301 322 300 322 0.96

5 10 5.5e-06 0.00069 21.2 0.9 1 23 331 353 331 353 0.98

6 10 2.4e-06 0.00031 22.3 2.9 1 23 360 382 360 382 0.98

7 10 1.6e-06 0.0002 22.9 2.3 2 23 388 409 387 409 0.96

8 10 7.6e-05 0.0096 17.6 1.9 1 20 415 434 415 437 0.96

9 10 0.0016 0.2 13.5 0.4 2 23 443 464 442 464 0.96

10 10 0.0036 0.45 12.3 0.4 1 23 469 492 469 492 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.8e-05	0.0073	18.0	3.5	1	23	212	234	212	234	0.98
2	10	2e-06	0.00025	22.6	0.5	1	23	244	266	244	266	0.97
3	10	2.7e-05	0.0034	19.0	3.0	1	23	273	295	273	295	0.98
4	10	1.9e-05	0.0024	19.5	0.6	2	23	301	322	300	322	0.96
5	10	5.5e-06	0.00069	21.2	0.9	1	23	331	353	331	353	0.98
6	10	2.4e-06	0.00031	22.3	2.9	1	23	360	382	360	382	0.98
7	10	1.6e-06	0.0002	22.9	2.3	2	23	388	409	387	409	0.96
8	10	7.6e-05	0.0096	17.6	1.9	1	20	415	434	415	437	0.96
9	10	0.0016	0.2	13.5	0.4	2	23	443	464	442	464	0.96
10	10	0.0036	0.45	12.3	0.4	1	23	469	492	469	492	0.96

Sequence Information

Coding Sequence: ATGGAAAGTGTTACACCAATTTGTCGCATCTGCTTAAACGCTTCAAAAGATTACATCAGTTTTCAAACACGATTCGAATGCGATAACGATGACACAATTCATGAAGATACCACAAATAAAATGGATTATCTACAGTGTTTACATTTATGTACGAGTTTGCCTATTGAGGAGAATGATGGTGGACCACAGCACTTATGTGTAGGATGTGGAGCCGAACTGCAGGTGGTTTATAAATTCCTCCAAAAGGCAAAAAATTCTCAAGCCATTTTGGAGGAAAGCTGCTGTCAGAAAAATGTCAATACAGAGACAATTGTACACACagaaatttctatagaaaagtttGACGGTGCTGTAATGGAAGATAATGATTTCGAGGACTTTATTGTTAAGTCGAGACATTTAAGTGATTCCAATGAGCTATCAAATAATTCCACCGATATCTCAAATGACTATAATGAATCGCCAAAAGATTTCTTGTATGATGATGAACCTCGCGACGACAATGACGTAGTCAAAATGGATGATGTTATCGAGACCGAATGGGAATCAAATGAATCATCGCAAGAAATCGAATATTTACCAGAGGATAATGAAACTTCACCGAaaaatacgtatatatttatacCTAAGAAATATAAATGTCACATTTGCGATCGTTTCTACACCACAGAGCGGCTTTTAAAAGTGCATTTAAGTTATCATAAACGCAGGAATGTAGGAAGTAAACCTTACAGCTGCAAAATATGTGGCGAATCATTTTCTTTGCAACGTTATTTAACACAACATATGATTGAGCATCAAGATTGCCGGGAAACACATAAATGTCAATATTGCGAtaaggaatatGTTTCTAAAACTGCCTTAACTAGTCATAAACGTATTCATCAAGGAGAAGCATTGAATTGTAATGAATGTGGGAAACAATTTAAAGGCAGTTATGAATTAAGTGTACATCTGAGATTTCATAGACGAGAAAAGGATAAGGGAGTGTATAAATGTAAAACATGCGATAAAGAATATTCTTCAGCACGCTATCTATCGCAGCATATGGCCGTTCATCTTGGCGATCGGGAAACCTACAAGTGCAGTTATTGCAATAAGAAATATGTTTCAAAATCTGCGCTTAACAACCATAAACGTCTACATGAAGGAAATACCATAGAGTGTAATGTATGCGGAAAACAATTTACACGCAATTGCGAACTAAAAATACATATGCGATTTCACAAACGTGAACATCCCTTCAAGtgtacaatttgtgaaaaagaATTCACAATAAAGGGGCACTTAAAAACTCATATGTGGCAACATGAGGGCATTAAATTGCAATGTAACGAGTGTGGTAAATTGTTTGGATCTACAAAGGCTTTAAATGAACATTCCTACACACATGGCGAAATGCCATATGCCTGTGAGTTCTGCGAAAAAGCCTATCCTTCACGACAAAAGTACAAAATACATCTTGAAAAGGTGCATTTCGCTGAAGGAAATGAAGCTGATTTATCGCAGATTGAGAGTTTGACAAAtgctaaaattttgaaaacgcgTAAGAACTTCACATATGTTCAGATTATAAAGGAGGAAGAAGTTGATGGACATCAACAAATAgattaa
Protein Sequence: MESVTPICRICLNASKDYISFQTRFECDNDDTIHEDTTNKMDYLQCLHLCTSLPIEENDGGPQHLCVGCGAELQVVYKFLQKAKNSQAILEESCCQKNVNTETIVHTEISIEKFDGAVMEDNDFEDFIVKSRHLSDSNELSNNSTDISNDYNESPKDFLYDDEPRDDNDVVKMDDVIETEWESNESSQEIEYLPEDNETSPKNTYIFIPKKYKCHICDRFYTTERLLKVHLSYHKRRNVGSKPYSCKICGESFSLQRYLTQHMIEHQDCRETHKCQYCDKEYVSKTALTSHKRIHQGEALNCNECGKQFKGSYELSVHLRFHRREKDKGVYKCKTCDKEYSSARYLSQHMAVHLGDRETYKCSYCNKKYVSKSALNNHKRLHEGNTIECNVCGKQFTRNCELKIHMRFHKREHPFKCTICEKEFTIKGHLKTHMWQHEGIKLQCNECGKLFGSTKALNEHSYTHGEMPYACEFCEKAYPSRQKYKIHLEKVHFAEGNEADLSQIESLTNAKILKTRKNFTYVQIIKEEEVDGHQQID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -