Gang030340.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Germaria angustata
Gene Symbol
-
Assembly
GCA_963681545.1
Location
OY813001.1:91472210-91475082[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00052 0.066 15.0 3.9 1 23 177 199 177 200 0.95
2 15 0.0068 0.85 11.5 2.8 1 21 205 225 205 226 0.92
3 15 0.54 68 5.5 4.7 1 20 286 305 286 307 0.94
4 15 9.8e-05 0.012 17.2 2.5 2 23 317 339 316 339 0.97
5 15 0.00029 0.037 15.7 1.3 1 23 416 438 416 438 0.97
6 15 0.005 0.63 11.9 3.2 1 23 444 466 444 467 0.95
7 15 0.0048 0.61 11.9 0.3 1 23 488 511 488 511 0.96
8 15 3.6e-05 0.0046 18.6 2.5 1 23 517 539 517 539 0.98
9 15 2.1e-06 0.00026 22.5 2.4 1 23 545 567 545 567 0.99
10 15 1.2e-07 1.5e-05 26.4 1.8 1 23 573 595 573 595 0.96
11 15 0.0079 1 11.2 4.1 1 23 601 623 601 623 0.97
12 15 0.00094 0.12 14.2 2.2 1 23 629 651 629 651 0.96
13 15 6.3e-07 8e-05 24.1 0.4 1 23 657 679 657 679 0.99
14 15 1.5e-06 0.00019 23.0 1.7 1 23 685 707 685 707 0.99
15 15 0.0083 1.1 11.2 0.1 1 19 713 731 713 732 0.97

Sequence Information

Coding Sequence
ATGTTAATACATGAAATATATGGTCGGGTGTGCCgagtgtgtatgtgtaaatCAAATAGCTTGCACGACTTAAATGAGACAACTGAAGATTGTCTCACCATGAATGAAATGTTGTCAAAGACTGTGTCCGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAAATTTGTGAACTGTGCATGGAGCACTTGCAAATTTCCTTCAGATTTCAACAGCTGTGTATGAACACTAATGAACAAATGCTGAAAATCTGGGAACAGTCCCACAAAGAAGAAGTTAAACAACAAGCATTAATAGGTGAATTTGAAAATGAAGAAGAACCAGATCCTATCAAAGTTGAATATGACATGGAAGGGGATGAACAAAAATACGATAATGTGGACGCACTGGAGGATTTTGAAAATGGTGATAAATGGGAGGAAAATGCCACAGAAAACGAAACACCTGACAAAGATAACttggCTTTGCaagaaaatacattaaaaccagtTACTATATTATCTAATCGGTCATCCAAAGGTCGATTTTCATGCCTAGAATGTACGGAAGCATTTTCAAAGTATTCTCAATTAAAGCAACATCGAAGTAAACATCACTCAACTCATCCTTTCGACTGTCGGAAGTGTACACAACgtttcaaaacaaaaagtttaatgaatAAGCATTCGAAGAGCTGcaaaaaagacaaaagaaaCATGTCCATTAAAAATGATAATGAGGGTGATGATGAGGACGAGGACTTGCCTCTTagcgctttaaaaaaattggaatctgGAAATGAAAGtgatgTTTCCAAGGAAAATgagaaaaagaaaaggaaaccaGTTAAAACTGTCGACAAAAAGACTCCCTATTATTGCTCCAAGTGTGACAGCTATTTTAAATACGGCTATCAGCTTACAAAACACAGTTGTAGTGACAACGATATCGGATCACATTCTAATAAATGTAACATATGCATTAAGACTTTTAATACGAAAAATTTGCTGCAAAAACACATGAATAGTAAGCATAATTCAACAAATATAAAGAAAGTTGCTGTCAAGACTTcgcacaaaaataaaaccagcAACAGCGATGACGATGGCCAGATAGAAGAAATGGACTTAGATCAGGATAATGATAACGATGGCAACTGGAATGATATAAACCACGGTGATTCATCAGATGATATCGATTCCGATTATACAGAAAAAGACAAAAGCACCGCAAAGTCAAAACCGGAACAAGCTGTAAATCAGTTTGCCTGTAATGAATGTGACGCTTCGTTTAGATTTGAAAAGCAGCGCGCGCGTCATATGAAAAAACATACGGAAGCTCACCGCTTTGTTTGCGCTTTATGTTGGGATCGCTTCAAATATCCACATATGCTGCAGAAACATATGGAAAAACATCATCCTGAAGAGAATCCCAACCCAAAAGCAGTAGAGACAAAAGCCGAAACTATGGAAAAGACACATGTTTGCAGCTATTGTCCGTCGGCTTATTCAAATGTTGGCGGTTTGGCTCAACACATGAGCAAGAAACATCCAGAAATTAAACCTTTTAAGTGTGACAAATGCGAAAAGACTTTTGTAgttgaagaacatttgaaaatacACACAAATCGTCATATgggtattaaaaactttaaatgtgaTCTTTGTGATAAATctttttcatttaagtttgCTATGAAGCAACATATGCGCATACATACAGGTGATTTAAACTATTTGTGCACACTATGTGGCAAAAAATTCTACAGGCCTAGTAATTTGCGTCAGCATATGCAACGTCATGGTGATGATAAACCTTATACATGCCCTCACTGTCCAAAGCGTTTTAAATGTCCTTCGGATCGTTACATACATTTGATGTCACATCAAGAGGGAAAAAATCATGTATGCCAGACTTGTGGTGCAAGATTTTCGCGAGTGGATACTTTACATCAGCATCAAATACTTCATACAGGAGAAAAACGCTATAAATGCGATCAATGTCCAATGGCgttCCCGCGTTTGATGAATTTAAATAGGCATTTGCGCACTCACACTGGGGAAAAACcgtataaatgtaaattttgcgAGAAGGCTTATGCACAAagtaatgatttaaataaacatttacgcACCCATGTTGGTGAAAACACATACATGTGTACCCAGTGTCCGGCTGCTTATAAATACCAAGCTGACTTAAGGAATCATGAATGGGAACACTATCGCCTTCAAAAAGAAGCAGAACAGAAAGCTAAAGAAGAAGCAACGGCATTAAAAATGAAAGATGAGCAAAGTGTAATGGAAGTAAatgtatag
Protein Sequence
MLIHEIYGRVCRVCMCKSNSLHDLNETTEDCLTMNEMLSKTVSGIHANIEFPVPQEICELCMEHLQISFRFQQLCMNTNEQMLKIWEQSHKEEVKQQALIGEFENEEEPDPIKVEYDMEGDEQKYDNVDALEDFENGDKWEENATENETPDKDNLALQENTLKPVTILSNRSSKGRFSCLECTEAFSKYSQLKQHRSKHHSTHPFDCRKCTQRFKTKSLMNKHSKSCKKDKRNMSIKNDNEGDDEDEDLPLSALKKLESGNESDVSKENEKKKRKPVKTVDKKTPYYCSKCDSYFKYGYQLTKHSCSDNDIGSHSNKCNICIKTFNTKNLLQKHMNSKHNSTNIKKVAVKTSHKNKTSNSDDDGQIEEMDLDQDNDNDGNWNDINHGDSSDDIDSDYTEKDKSTAKSKPEQAVNQFACNECDASFRFEKQRARHMKKHTEAHRFVCALCWDRFKYPHMLQKHMEKHHPEENPNPKAVETKAETMEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCEKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKEEATALKMKDEQSVMEVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259363;
90% Identity
-
80% Identity
-