Gang030342.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY813001.1:91483208-91487058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0002 0.025 16.3 1.7 1 23 185 207 185 207 0.97 2 15 0.0011 0.14 13.9 1.9 1 23 213 235 213 235 0.98 3 15 1.4e-06 0.00017 23.1 1.4 1 23 339 361 339 361 0.98 4 15 2.2e-05 0.0028 19.3 0.3 1 23 474 496 474 496 0.96 5 15 0.0049 0.62 11.9 1.0 1 23 502 524 502 524 0.96 6 15 4.5e-06 0.00057 21.4 0.5 1 23 541 563 541 563 0.98 7 15 0.0053 0.67 11.8 0.6 1 23 572 595 572 595 0.95 8 15 0.0025 0.32 12.8 5.4 1 23 601 623 601 623 0.98 9 15 5e-05 0.0063 18.2 0.3 2 23 630 651 629 651 0.97 10 15 2.5e-08 3.1e-06 28.6 0.7 1 23 657 679 657 679 0.96 11 15 0.0021 0.26 13.1 1.3 1 23 685 707 685 707 0.98 12 15 4.5e-05 0.0057 18.3 1.6 1 23 713 735 713 735 0.96 13 15 3.8e-05 0.0048 18.6 3.2 1 23 741 763 741 763 0.99 14 15 6.9e-07 8.7e-05 24.0 0.7 1 23 769 791 769 791 0.99 15 15 5.4e-05 0.0068 18.1 2.0 1 23 797 819 797 819 0.97
Sequence Information
- Coding Sequence
- atgtctaatGACTTAAGTTCCAAATGCCGCACGTGCTTGAATGAATCAAATGTTTACCACCAACTATTTGATTATgtagaagaaaattataaaattgtagaAATGTTGGATGGTATAGTGCCTCAAATAGATATAAAGACTTCATCGCAATTTTCCACATTAGTTTGTAAGATTTGTGTGGATAAATTGCTAACCGGctataaatttcaacaattatGCATAGAAACTAATAATCGGCTACATGATTTGTTGGGAATTGCTATATTTGAGACGGAGCCGAAATTGGAAAAGATATTGGATCCCCTGACAGGCGAGTCAAATCTGAAGatgaagcaagaagtcgaagaTGCTTGTTTTGAATGCGAAACATTGCCATATGAATTAAGCGAGGAATTTAGGTCGGATAATAATAACTGTGATTCGGATGGTGCAAGTGATACAGATTCAAGTAATGAAAAACTATCTGTTTTAAAGGAAAGATCATACAAAAAAGTTCCTTTGCAGagtgaaaattttcagaaaacGCACAAACTTAACCGCCGTAAATGTCACTTTGTTTGTACTGAATGTGGTAAAAGTTGTAGTAGTTTAAATAGACTGAAGCAGCATACGGCTATACATGATAAAAAGCGGGCTTTTTCATGTAAAATCTGCAATACTAGCATGAAGTCCGAGAAAACCTTTAAAGCCCATATGTTAACTCATACAGGTGGAAAAGATGCTTTCGAAAATATCGCAAAAGAAAATCacaatatggaaaataacgACTGCAAGGAGATTTTTGAGACAGAAGAGTTTTTAGATGAGGATGAAGCAAAACATAATGAAGTAGAAGAAGTGGAgtgcaaaagtttaaaaaaactgcTTACTTTTGAATACCCCGAGTATAAAATTCAGCAGAGAAAagaattattaagaaataaaagcaaaaatttagtGTTGGGCTTTCAAGATGAAGATGAAGCAAAAGATAATCAAGAAGAAGTGGAATGCAAAGACTCAAACATATTTACTTTTCAATGTCCCGATTGTcccaaatgttttgaaaaaaaagcttCATTGTCTGCTCACTATAAAGTTCAcaagaaaaaagaattatataaaattaaaagcaaacatttcAACAGTGGCTTGCAAGATGTTGAAGAGCTTGAATCGCCAAACAAGTTTCaggaaaaaacaaatgacaTAATGGGAAACATTTCGGAAGTTATTGTAAAAGAAGAAGTTGACATTGTACCACAAATGTTAGATGACAGCGAAGATTGGTTCAATAATGATTTTGAGGATTCAGATGATAATTCGGATGATGAATTGTTTACCAAAAGTGGAGcaaaggatattaaaaatgttgattttgttGATACTGGCATAGGTGAGGTAGAaaaGCCCAATAGCAGTAACAAAAGGAATGGAAATTTTCCCTGTGAAGTGTGTGGAAAAATATTCGATCGTCCTTATCGGTTAAAACGTCACAGTTCAGTACATTCCCTTATAAGGCCACATGAATGCGAAATTTGTAAATATCGTTTTGCCACTGCCAATATCCTAAAAGCTCATATGtttcaacataaaaacgaaacaAGTGGTATTTTGAACTATCAATCTCGACCTGAAGGGTTTAAATGTCCCGATTGTCCCAGACGTTTTGAGAAGCAAGCCTCCCTCTCAGCCCATCGACAAAGCCACACACGCAATACTTCCGAAGCGAATTATCCTTGTACGGTGTGTCAGCGTAATTTCATGTCAATAAGATCCTTAACCGAACACATTACAAATAAACATCCCGAAGTTGAAAAACACAAATGTAATCAGTGCGAAAAAACATTTGTCTTACATGCCCACCTAGTGGAACATTTAAATCGTCATAAAGGCAATAGAAACCTTGTGTGTTTAATATGCGAAAAAGAGTTTGGATACAACAATACGTTAAAAGAACATATGAGAACACATAGTGGTGAAAGCCCTTATCTGTGTCCCCAATGTGGTAAGACATTTCGTAGTGCTAGTAATTTGCGTCAGCATATGGAGAGACATactggtttaaaaaaataccagtGTCCAGAGTGCCCCAGTCGCTTTAATTGTAGGTCAGACTTGATAAAGCATGCATCAACGCATTCGAATGCAAAACCTCATGTCTGTGATATTTGTGGGTCACGTTTCACCAGAGCATattcattacaaaaacacaaGTTGCTACATTCAGGAGAAAGACCATTCAAATGTGATCAATGTAGTATGACgTTCGCCATAATTTACCATTTACGGCGTCATATGCGCACCCATACTGGAGAGAAACCCTATAAATGCAAATATTGTGACCGAGCTTATGCTGAAAGCGGAGATTTAACTAAACATTTGAGAACACATGTTGGTGAAAACACATATATGTGCGATAAATGTCCAATGGCATTCAAATATCAAGCTGAATTAAGGAAGCATCAGTCCCACCATTACCTAATGGAACAAAAGGTTTTGACGCAGACGCGCAACATGTCCGAAGAAGCACAACAGGAAATAACGGAACAAACACAACAAGATCAACCGAATGTACAACGTCAACATTTTCCAATTCAAGATCATCAGCAAAGTAATCAAACGTCATTAAAATCTGAACAAATTCACATGCCCATAGGTATGCCGGGTTATCAGCAAATGCCGCAACTTTCTACTATAGTGGAACAAACACAAAATCTTGCGAAAACTGTTAATATTGTGAATCGACAAGAGAATTTAGATATATAG
- Protein Sequence
- MSNDLSSKCRTCLNESNVYHQLFDYVEENYKIVEMLDGIVPQIDIKTSSQFSTLVCKICVDKLLTGYKFQQLCIETNNRLHDLLGIAIFETEPKLEKILDPLTGESNLKMKQEVEDACFECETLPYELSEEFRSDNNNCDSDGASDTDSSNEKLSVLKERSYKKVPLQSENFQKTHKLNRRKCHFVCTECGKSCSSLNRLKQHTAIHDKKRAFSCKICNTSMKSEKTFKAHMLTHTGGKDAFENIAKENHNMENNDCKEIFETEEFLDEDEAKHNEVEEVECKSLKKLLTFEYPEYKIQQRKELLRNKSKNLVLGFQDEDEAKDNQEEVECKDSNIFTFQCPDCPKCFEKKASLSAHYKVHKKKELYKIKSKHFNSGLQDVEELESPNKFQEKTNDIMGNISEVIVKEEVDIVPQMLDDSEDWFNNDFEDSDDNSDDELFTKSGAKDIKNVDFVDTGIGEVEKPNSSNKRNGNFPCEVCGKIFDRPYRLKRHSSVHSLIRPHECEICKYRFATANILKAHMFQHKNETSGILNYQSRPEGFKCPDCPRRFEKQASLSAHRQSHTRNTSEANYPCTVCQRNFMSIRSLTEHITNKHPEVEKHKCNQCEKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYNNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCDRAYAESGDLTKHLRTHVGENTYMCDKCPMAFKYQAELRKHQSHHYLMEQKVLTQTRNMSEEAQQEITEQTQQDQPNVQRQHFPIQDHQQSNQTSLKSEQIHMPIGMPGYQQMPQLSTIVEQTQNLAKTVNIVNRQENLDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -