Gang021517.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY813000.1:49428878-49430737[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-07 0.00021 22.2 0.0 8 39 399 430 397 435 0.89 2 4 9.3e-14 1e-10 42.4 0.0 5 44 450 489 447 490 0.93 3 4 0.046 52 4.9 0.0 27 38 519 530 515 536 0.88 4 4 2.4e-14 2.7e-11 44.2 0.0 4 41 558 595 558 597 0.92
Sequence Information
- Coding Sequence
- atgaaTCACTTGAAGTGGATGGGCCATTCGGCCACAATATTAGATATACATAAAAATCTACGAGCAGATTTGAAGAGCTGTGAAGTAACATTAGTGGCCAAGGGACACTGCGTTAAAGCCCATCGATTCGTGTTATCTTCTTGCAGTGACTTACTACGTTGTCTACTTACTGATGTTCCCATTGGACAGGAATGTTGCCTTATGCTTCCCGACATTAAAGGACATTTGCTGGATAATGTTTTGGCTTTTATATACTTGGGAGAATGTTCCTTATCTTCTACAAATTTGTCCGAGTTTTTAGAAGCTATCAATGTATTGGGCATTAAGAGTGCCATTAGTTTTGAATGTAATACAAATGCTTTACAGACAGTTCAAAGTGTTAATTCCAGTACAATCGCCTTGGATAGCAATACAACTATGGCGCCAGTAAGTAATACTTTAGCAAACGCTCAGGTGACAGTTGGGAGTTCAGGTGATTCATTGAATCAGGAAGAAATAATTGGTTCGCAAAATGTGCTCCATAATGAGGCTCATACTGCAATTTCTGGTACCGCAAACAATTCTGGTGAAACCAGAGAACTCGATTTTTTAGACGTTTACCATGAACCTCAACATAAAATAACATATTCAATAGAACATGTTCCAGGTTCTACAGCTggcaatgaatttattttaacggAAAACTCTGGTACTTTCACAATAACTCATAGCGGTAAATTAGAACCCACTACATCTCCTGCGGAATCGTCAAATATGGAAGTTACGGAGGATGACGGATGTGATTCACATATTATAGAAGAATACAGCAGTGGTGATGAACCTTTAATACAAATGGGTGAAACTGGACAAGAACAAGAAAGTGTAACAGTAGCCCAGTCTATAACGCAACAACACCAGCAGCATCACACAACACCACTTGTTCCAGTAGCAACGACATCAACTTCAATTATACACGTAAAGCCAAAATTGAAAACTCTTAAACTTAAACATCCACAGGGATCTCAAAGGATAATAGCAAAAATGGAACAACTTTCTGAAGATGCGGCGAGCGATGACCCCATTTCAATATTGCAAACATCAAATGAAAGTTTTACTTTACTGAAAGATGCCTCCATAATGTCCACAAGTAATACTAGTCAAGACGAATCAGCGGATTTTTCTATGAACAACTCTGACACGTCTGCAACCGAATTAGCCTACCAAGCTATGATGAATGAGGGTATGTCTTTGCCAAAGGCCGCTGACAAGTTTAATGTTTCTAAAGCGGAACTATGGCGTAGAGTTCGTAGTACCGGAGTTGAACAGCTCAACAAAGCGGTCAAACTCGATCCTGACAAAATTGATGTCATAGAATTAGCTAGTAAGGCAGTAATAAATGAGGGTTTATCGCTACAAAAAGCCGCCATACGTTACGATATATCCAAAACCGTGCTTTGGCGCAGAGTCCGCAAACATCCGCAATATATGAAGACTGCACGTGAAAATCCAATTATAATTAAGGCATATGAACGATTAAAATCTGGCGAATCTCTTAAAAGCATATCGCAAGATTTAGATATACCCATGTCTACTTTGCACCGACATAAAGTACGTCTCTCACAAACTGGTCAGCTGCCTGACTTTGTTACGTGCAAGAAACGTGATAGCATGTCAAAAGAtgatcttaaattaaaattgtctaaAGCAGTGCATGCCTGTGTACACGAAGGGATGTCGCAAAATCATGCtgctaatttatttcaaatttccaAAAGCACTTTATGGCGACATCTGCAAAAACGAGTAGCTGAAGCGGAAGCCGCTGAGACCGAGTCTATGGGGGACGAGGATGAAATTAAACAAGAAGTAATTCTTTCATAA
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCLMLPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQTVQSVNSSTIALDSNTTMAPVSNTLANAQVTVGSSGDSLNQEEIIGSQNVLHNEAHTAISGTANNSGETRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTITHSGKLEPTTSPAESSNMEVTEDDGCDSHIIEEYSSGDEPLIQMGETGQEQESVTVAQSITQQHQQHHTTPLVPVATTSTSIIHVKPKLKTLKLKHPQGSQRIIAKMEQLSEDAASDDPISILQTSNESFTLLKDASIMSTSNTSQDESADFSMNNSDTSATELAYQAMMNEGMSLPKAADKFNVSKAELWRRVRSTGVEQLNKAVKLDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIIKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01177077;
- 80% Identity
- iTF_00742036;