Gspi032047.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390740.1:9507655-9513586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 7.9 8.2 0.1 1 23 353 376 353 376 0.97 2 13 6.2 4.4e+02 2.7 0.8 1 23 469 493 469 493 0.76 3 13 0.001 0.072 14.6 4.6 1 23 496 519 496 519 0.96 4 13 0.059 4.2 9.1 2.0 2 23 526 548 525 548 0.94 5 13 0.033 2.4 9.8 3.8 1 21 639 659 639 660 0.95 6 13 0.0011 0.075 14.5 2.2 2 23 672 694 671 694 0.94 7 13 0.0047 0.33 12.5 1.5 1 23 697 720 697 720 0.96 8 13 8.5 6e+02 2.3 0.1 1 23 750 773 750 773 0.93 9 13 2.1 1.5e+02 4.2 0.4 2 23 780 802 779 802 0.94 10 13 0.13 8.9 8.0 1.0 2 23 811 833 810 833 0.95 11 13 0.19 13 7.5 0.1 3 23 840 861 838 861 0.93 12 13 1.3 93 4.8 0.2 2 23 991 1013 990 1013 0.94 13 13 0.11 7.8 8.2 1.0 1 23 1026 1048 1026 1048 0.97
Sequence Information
- Coding Sequence
- ATGGAGACGAGACTGTGTAGAATATGCGGGAAATTCGCCGACGAgcatttgaacattttcaagACCGAAGGCTTGAAAAACAAGCTCGAAACCTGTTTGCCAATAATAGTCTCCAAGCATTGCCTGTTACCCGACACGATATGCCTTGAATGTACGGAAAACGTCGAGAATTTCTACGCCTTCATGAAGAACGTGCTCCAAAATTTGATCATCTTGGAGGCGCAATTTGACATACACGAGTCCGGACTGAAGAGCAAACGTAAATTCGAGAAGGGCACGTCGACGGAAGTCAAAGTCTTGCGGAAGGAAGAATCCACGCAGACGAACGAAATCAGCTATTTTAACGTCTACAGAGAATCGGTGGATTTGTCGAAGACCTTGGAGGAGGCCGAACGGACGCTGAGCGACAAGTCGTATCTGAATTATGTGCCCAAAACTGACTGCGATAAGGACGTAATGCTCGTCGATTACGAGCTGTCGGATAATTCGTCAGACGGAGATTGCGAAGACGATTCCAACAGGAAGGAGTTCGTCGAGAGTTTCATGCTCAACCGGAAGTACTTCGACAACCAGGAGAATAAGCTGATCAACCGCATAGCTCAAAGGATCGGCTCAAAACGAAAGAACGAGGAAATACTTCCGTACAAGGCCAAGATTTGCAAGTTTGACGTTAATAATCGACGGAAGAGCAGGCAACCGAAGAAAATCGAGCTGAGGAGCATAGAGAATGTTAATAGTTTCGGTGAATGGAACAAAGGGGGCAGCGAGGTGAAAAATGCTGAAATGAACGAAGAAACACAACAGGTTAATGGAACCCAAATTAGTCTACCTCAACTGTGTTTGCTGTGCGATTCTCAATTCGGAAGTGCGCCCCTGTTGGCAGCTCACGTCTTCGAAATGCACGGCATCGACATGGCACAAGTCATCTCATCGGAACCCATCCtggagaagaaaaagaaaattccaaatttGGTGAAGATTACGGATCTAAAGATCAAAAACGAACAAGAACTGCCGGTATATTTGCCCGAAGATCCCCCAACACTCCAACCGATCTTCGTGTGTCCGCTTTGCCCGGCGGAGCTAACTATCCGCAACGACTTATACACTCACTTACGCATCAAACACCCGAAGCAATCGTCGCTAATGTGCGGTCTTTGCATGCACATGGCGACCTCGTTCGCTTCCCTCGTCGATCACCTGGAAACGTGCAAAGACCAGCATCAAATCCTGAACAAATACGTGTGCAACGTGTGCTGTTACAACGAAGACAACTCGAAGCTGATCGAGAATCACGTCATAGTGCACGACTTTCTCATGATTTACTGCAAAAGGCAGTCGAAGATTTTTGACCCCAGCGATTACGTGAGAGTGAATGCCGATTCCGAAGTCCCCGCGAAAACGTACACGTGCACCGAGTGCGACGAGGCGCAATTCGAAGACTTCAAGGTGTTCAGCTCCCACCGGAGATCGCAGCACCAAATCTTCCACTGCGACTTATGCAATAAGTTCTACGGCAGGAATTCGCATTTGTGGAAACACGTCAATCGGCTGCACAAAGGCCATCCGAGCATCACGTGCCAGTTGTGTTACAAAACGAGCGCTTCGAAGTATCACCTAGCGCAGCACTTCAGCAAAATACATCGTGCGAAATTATTCGATTCGAAACAGGATAATTCACAGGAGCAAGACAATTTTATGCGGCAGAAGTTCCAAGGTTTCGACTTCCAATCAGTCAAGCAGAGTTTCATGCGACAGGAGCTGTTAAAAACGGAAGTGAAAGAATCTGTAAGCGAAGCTTCCGACGACGAAATTCCCAACGATAGCGTCGAGCTACCGAAAGAAATCGACTCGACAAGCAACTTGTACACGAACATCATCACCAATTACACTCCGCCGCAAAACAACGGCGAGTTCAAGTGCCCCAAATGCCTGAAGGGCTTCCACAAGAGAAACTTGTTAAAAAAGCATAAGAAAAATTGCCGGCCGAGGTTGCAAAAGGACCTCCTCACTCGATGCAAAACGTGCTCGAGGATCTTCAAAGACCGGCAGAGCCTTACCAAACATCTCATCAATTATCATTCGGAATACGTTTGCGAAATTTGCGGCCAGAAATTTCAAAGCAAGTGCGAGATCGTCTCGCACATTCGGTTCACGCACCCGAACTGTCACTTATTCTGCACGTGCGGTAACATCCTGAGGAAAAAGGAAGATCTGATCGCGCATAAGCAAGACCACCGCAACTCTTTCGTGTGTCAGTTTTGCGCCGACGCCCTGCCAACCAAAATCAAGTTGAAAATGCACATCCTCAGTTTACATCGAAAAATCTTGAGTTTAAGCTGCGGTATTTGTCTGCGGTTGTTCGAGACCCAGCACATCCTGAGAGATCACGTCAGACTGGTACATAAGGAACACCTTTTGCCGTTGACGTCGTGCACGGTGTGCGGGAAGAACTACGGGTCCAAGTGGAAGACGTTTGATCACCTCAACAAGTCGCACGGCAGGATTTTCAAACCTTGCAAGGCGTGTTTGGAGGTTTTCGATTCGGAGGAGCAATTGCAAAGTCACTACGAGGTCTCGCACACGAAATTCACGAAAAGCAAACCGATGGCGCCGCAACAATTGAAAAAGGAATATGAAAGCGATTGTTTCGACAACGACGAAAAGCAGTGTGAGAACACAAACAGTGAGataTCAAACGAGGGCTTCGAACCCGAAGAAGTCCAGACGAAATTCAACCTGAATACCAACGAAAGCAAGATCTCTTTGCTAGAAAAACGACTGCTGGGGAAAAAAACGGATGAAAAGAAGCCGTCAGTCAACAACAGTCCATTACAGAACAGCTCTAAACGTACCGTCTATGTTAACAGCTACGACCCTTCCCTGTGCGAGATTTGCTTAAAAACGTGGCCGGCGAAAAAGCATTTATGGCAACACTACATACGTTGCCATAAGATGGTGGCCGCCACGGTGTGCGGCATCTGCTTGAAAGTGAACGAAACGTACGTGTCCTTGCAGCAACACTTGAAAATGAACCATCCGACTTTGTTACACGGACAGGGTTTCGGGTCGAATTTCATTTGCAAGATATGCGGAcgGTACCACAACGCTAGCTCAAAGTTAAAGTTACATATGGCAATACACGAAAACTTCGATTGGAAGATACTGGAGGAAATTAAAACGGAGCCAATCGACAACGGTTTCAACGATACGGACATCGCtccagaaatagaaataaactaCGAGAGCTTAATCGAACAGGTGGAGTGCACCTCCGAGTCTGAATCGGACGACAAGTCTCAGTACAACCAGGACGAGGAAAGCAGTTCGAGCGAAGCGTCGGACAACAAATCCGAAGCGTCCGATTCGTTGGAATCCCAGATGTTGAAGAACATGCTGATAGAAAAGGACATGTTGGCGAAGGGCATCGTGGACAATGACGTGAAGCAGGAGTTGACCAGCTCGGATAGTGAGGATTCGAGCAGCTCGAGCTACGCGCAGAACGATTACGAGATGCATGTGAAGATAGAGTCGTCCGAGGATGAGAACGACGACGATGACTCTTTGCTCAGCGAGCGGGAGGACGCTTCGAACGATTGCACCAGGAACTTGTTCGATCGGCAGCCTGAAGAACTCGACTCGGCGATCAAGTCGATCAGTTTCGAGCGGGAGAACGCCGAGAATCAATTCACCGACGATCAGTTCGTCGACATCCAGGCACACAATCCCAACCCGAACGAAATACAAAGTGCGGTCGATAGCATActgtag
- Protein Sequence
- METRLCRICGKFADEHLNIFKTEGLKNKLETCLPIIVSKHCLLPDTICLECTENVENFYAFMKNVLQNLIILEAQFDIHESGLKSKRKFEKGTSTEVKVLRKEESTQTNEISYFNVYRESVDLSKTLEEAERTLSDKSYLNYVPKTDCDKDVMLVDYELSDNSSDGDCEDDSNRKEFVESFMLNRKYFDNQENKLINRIAQRIGSKRKNEEILPYKAKICKFDVNNRRKSRQPKKIELRSIENVNSFGEWNKGGSEVKNAEMNEETQQVNGTQISLPQLCLLCDSQFGSAPLLAAHVFEMHGIDMAQVISSEPILEKKKKIPNLVKITDLKIKNEQELPVYLPEDPPTLQPIFVCPLCPAELTIRNDLYTHLRIKHPKQSSLMCGLCMHMATSFASLVDHLETCKDQHQILNKYVCNVCCYNEDNSKLIENHVIVHDFLMIYCKRQSKIFDPSDYVRVNADSEVPAKTYTCTECDEAQFEDFKVFSSHRRSQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLAQHFSKIHRAKLFDSKQDNSQEQDNFMRQKFQGFDFQSVKQSFMRQELLKTEVKESVSEASDDEIPNDSVELPKEIDSTSNLYTNIITNYTPPQNNGEFKCPKCLKGFHKRNLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLTKHLINYHSEYVCEICGQKFQSKCEIVSHIRFTHPNCHLFCTCGNILRKKEDLIAHKQDHRNSFVCQFCADALPTKIKLKMHILSLHRKILSLSCGICLRLFETQHILRDHVRLVHKEHLLPLTSCTVCGKNYGSKWKTFDHLNKSHGRIFKPCKACLEVFDSEEQLQSHYEVSHTKFTKSKPMAPQQLKKEYESDCFDNDEKQCENTNSEISNEGFEPEEVQTKFNLNTNESKISLLEKRLLGKKTDEKKPSVNNSPLQNSSKRTVYVNSYDPSLCEICLKTWPAKKHLWQHYIRCHKMVAATVCGICLKVNETYVSLQQHLKMNHPTLLHGQGFGSNFICKICGRYHNASSKLKLHMAIHENFDWKILEEIKTEPIDNGFNDTDIAPEIEINYESLIEQVECTSESESDDKSQYNQDEESSSSEASDNKSEASDSLESQMLKNMLIEKDMLAKGIVDNDVKQELTSSDSEDSSSSSYAQNDYEMHVKIESSEDENDDDDSLLSEREDASNDCTRNLFDRQPEELDSAIKSISFERENAENQFTDDQFVDIQAHNPNPNEIQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -