Gspi029509.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390739.1:15022855-15030711[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00052 0.037 15.5 3.3 1 21 292 312 292 314 0.95
2 12 1.7e-06 0.00012 23.3 2.1 1 23 320 342 320 342 0.99
3 12 0.16 12 7.7 5.6 1 21 348 368 348 370 0.92
4 12 8e-05 0.0057 18.1 4.4 1 23 376 398 376 398 0.98
5 12 0.0022 0.16 13.5 5.1 1 21 404 424 404 426 0.95
6 12 0.00021 0.015 16.8 4.9 1 21 432 452 432 454 0.95
7 12 0.024 1.7 10.3 5.2 1 21 460 480 460 482 0.94
8 12 0.0032 0.23 13.0 4.6 1 23 488 510 488 510 0.98
9 12 0.0021 0.15 13.6 7.8 1 20 516 535 516 538 0.96
10 12 7.2e-05 0.0051 18.2 4.0 1 23 544 566 544 566 0.98
11 12 1.1 80 5.0 0.9 3 21 574 592 573 594 0.94
12 12 2.8e-07 2e-05 25.8 4.4 1 23 600 622 600 622 0.99

Sequence Information

Coding Sequence
ATGGAAATTGGTACCAATAGAAATGGAAATGATTCTAACCGTGTATTAGTCGAAGTCAAACCAGAACCAACGGCAATTTTAAACTTGATGAAGTCTCACCACACGTCCACGCAATGTTCAAATGTCATTGAAAATATGGATGGATCACGTAACGAAAAATCTGTTGAAGATGCGAGAAATACTTTGGATTTCATGCGCAGCAGCACAGATGAGGAATTGACGACACATAAGTGTTTTCAAACCAATGCTGGTGTGTTGGAGTGTTTTGAGAGGAATGATGCTGTGTCGAACCAGACGAACTCGTACAACTTTGAACTTTCAAATAAGAATGTTGTGAAGAATCACATCAAGCAGGAttccaaatatatatttgataatCACATAGAAATGGATTCAATGGATTTGAAAGTCAAACAAGCTGGTAGATTTCATGCACGGACAAATATCGAAGAATGTTATATTAAAGAAGAACATTTGGATGCCGTGTatgGGTCGAATACGTTGGACAATTGGAACGAAAATGGCGAGGATGATTCTATTAAAATGCTACACGACATCCAGATTTCTGAGCAACCTGAACAAGATGCTGGTGGATTTCAGAATCAAGATCTTAGCagagatgaagaagaaatttTGGACAATCAATGTGaaaaaatggaaatgaaagcaACAACAAATGGAAGCGATTGTAATCACATATTTTTACCAATGAAGCTAGAACCAACTCAAACATTAAACTTGAAGACATGCTCATCTTCAGAAAGATCAAAACCTGAGAAAAGTGATGTGAATTCATCATCCAGCAACAGTGCCACCGAAGTCGGTTGTTATACGACACCAAGCGAGCATAAAATAGACAACACCGGCAGAAACCACAAATGTGACATTTGCACTAAGAGCTTTAAAGCAAGAAGCGCATTGATGATCCACATGAATTGTCACACTAACGAAAGGAACTACAAGTGCAACGTTTGCACGAAGAGTTTTAAAACGAAAGCTAATATAATGACCCACATGCAGTCGCACACGAAAGAAAGAAATCACATATGCAATATTTGCACGAAGCGTTTCAAAACGCGATCAATTTACTTGCAACACATGAAATGCCACACGAAAGAAAAGAACCATAAATGCAACGTATGCTCCAAGCGTTTCAGAACTAGGAACAACATGCTGGAGCACATGCAGTCGCACAGCGACGAACGAAACTACAAATGCGATATTTGCACAAAGAGTTTTAAGACGAGGAACTCGATGACGGAGCACACGAAATGTCACACCAACGAACGAAACTTCACCTGCGATATTTGCACGAAGAGTTTCACGAGGAGGAGCACCATGTCGAACCACATGAAGTGCCACACCGACGAGAGGAATCACGAATGCGGCCTTTGCGAAAAGCGTTTTAAAACCAGAAGCAAGATGTTGGATCACATGAAGTGCCACACGAACGAGCGAAAtcacaaatgcgacgtttgctcGAAGAgcttcaaaatgaaaaacacTATGATGATCCACACGAAGCGGCACAATAACGAGCGAAATTACAAGTGTACCGTCTGCACCAAGTGTTTTAAAAGCAAACGCGAACTGTTTGATCACATGACGTGTCACACTGatgaaagaaatcacaaatgcgaTGTTTGCACGAAGGGTTTTAAGACCAGGAACAATATGCTGAAGCACATGAAGCTTCATGTTAATGAAGGGAAACATGGGTGTGATATTTGCTCGGAAATTTTCGAAAGTAAACGCAGACTGGTGGATCATGTTAAATGTCACGCAAACGACGGGCGGTATAAATGCGATATTTGCACGAAGAATTTCAAAAAGCAAAACAATTTGAAGAAACACATGAAAACTCACAATTGTGCAGTTAGAAATAGAAGAGTTTTAAAGCATCATATCAAACAAGACTTGGAATATATGTGTGATACTTTTGAGGAAATCGATTGGAAAGATCCCACGCTAACCCACAATAAACGCAATACATTGTACAAAGAATCTATTATCGAACAGTGTAACATAAAGGAAGAAAATATGGAGTTTGAATGCGATCTACTGAAGACCAATGTCCCAAAGCCCACAAATGAAACTCAAATTCAACGTGCACTCATGGATATCAAAGAGGAGGAAAATATATTCGTTTCTCCGCACGTGAAGCAAGAAGTAAATACGATGATTTCCACATCATTTACAGGTACACTTGTCATAACACCTGACAGTGCCGAAGTGAAACAGGAAATTCCAAATTCAAATATATCTGAAAACACCGATACGAATATGAGTGGACGGTTAAGTAGTCATAACCCGTTTAAGTGGAACGGTGTCAGCTGTGGCAAACTGTTGTCATATTTGGTCGGAGGAAGGACGAGAACGAGCCAGACATTCATGGTGTCCCCGACATACAACAGCACATCAAGACAATCGCTTAAGACTACTGGCTGTGAGGGACCATTTTTTGACCACCCGTTTGATTGCGAACCAATGGTGTGGAAAAGAAGGCAGAAGGGTAACCACTAG
Protein Sequence
MEIGTNRNGNDSNRVLVEVKPEPTAILNLMKSHHTSTQCSNVIENMDGSRNEKSVEDARNTLDFMRSSTDEELTTHKCFQTNAGVLECFERNDAVSNQTNSYNFELSNKNVVKNHIKQDSKYIFDNHIEMDSMDLKVKQAGRFHARTNIEECYIKEEHLDAVYGSNTLDNWNENGEDDSIKMLHDIQISEQPEQDAGGFQNQDLSRDEEEILDNQCEKMEMKATTNGSDCNHIFLPMKLEPTQTLNLKTCSSSERSKPEKSDVNSSSSNSATEVGCYTTPSEHKIDNTGRNHKCDICTKSFKARSALMIHMNCHTNERNYKCNVCTKSFKTKANIMTHMQSHTKERNHICNICTKRFKTRSIYLQHMKCHTKEKNHKCNVCSKRFRTRNNMLEHMQSHSDERNYKCDICTKSFKTRNSMTEHTKCHTNERNFTCDICTKSFTRRSTMSNHMKCHTDERNHECGLCEKRFKTRSKMLDHMKCHTNERNHKCDVCSKSFKMKNTMMIHTKRHNNERNYKCTVCTKCFKSKRELFDHMTCHTDERNHKCDVCTKGFKTRNNMLKHMKLHVNEGKHGCDICSEIFESKRRLVDHVKCHANDGRYKCDICTKNFKKQNNLKKHMKTHNCAVRNRRVLKHHIKQDLEYMCDTFEEIDWKDPTLTHNKRNTLYKESIIEQCNIKEENMEFECDLLKTNVPKPTNETQIQRALMDIKEEENIFVSPHVKQEVNTMISTSFTGTLVITPDSAEVKQEIPNSNISENTDTNMSGRLSSHNPFKWNGVSCGKLLSYLVGGRTRTSQTFMVSPTYNSTSRQSLKTTGCEGPFFDHPFDCEPMVWKRRQKGNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-