Gspi031062.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390740.1:487926-489008[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.001 0.072 14.6 2.4 1 23 100 122 100 122 0.95 2 9 0.00063 0.045 15.3 0.2 2 23 129 150 128 150 0.94 3 9 4.9e-05 0.0034 18.8 1.1 1 23 156 178 156 178 0.98 4 9 0.0075 0.53 11.9 2.6 1 23 184 206 184 206 0.94 5 9 7.7e-05 0.0054 18.1 2.0 1 23 212 234 212 234 0.97 6 9 5e-05 0.0036 18.7 0.3 1 23 240 262 240 262 0.98 7 9 7.1e-06 0.0005 21.4 1.6 1 23 268 290 268 290 0.95 8 9 0.00048 0.034 15.6 0.3 1 22 297 318 297 320 0.84 9 9 5.9e-05 0.0042 18.5 1.7 1 23 326 348 326 348 0.98
Sequence Information
- Coding Sequence
- ATGGACAGTGATGTTTTGCAATGTGCGATTCCAACCACAAAATGTGGCGTTACCATAAAAGAAGAGCCACATGAAACTGCTCAAACATCGATCCCCGTCGATAAAACACGAAATGTTTCATATCGAGGAATCGCACCCGACGACATCCGAATTAAATTGGAGCTCGACGACAACGCCGACGATTCGACGAACTCTTGCAGCAACGACCGAAAACCACCAATCATCGATTTCACGAAAAACGCCGAAAACAACGAAGCGAAACGCCCCGACGTAAAATCCGAAGTAATTCCCCGTCGTCACAAGTGCGGCGTTTGCGACAAACGCTTCACGTCGAAGACGTACGCGCGGCTGCACGAAAAAGCGCACTTCGACGAAAACGGCCTCGAGTGCGAGCCTTGCGGCAGACGCTTCGTGACGAAGCAGCAACTCTCGGACCACGCGCAGACGCACGCCGgcgtgaaaaatttcaaatgcgacACGTGCGGCAAGCGCTACATAAAGAAACGCACTCTCGCCGAGCACGCGAAGATGCACACCCTGGCGAAAAATCAcgagtgcgaaatttgcaacagGCGTTTCAAAACCAAGGGCATAATGTCGCAGCACAAGAAAATACACACCGTCGAAAGGAACCACGAGTGCGAGACGTGCGAGAAACGCTTCACGCTGAAAATAAATCTGCGACAGCACGTCGAGACGCACAGCCGAGGGCAGAGTTTCGAGTGCGAGGTTTGCGACGCGCGCTTCCCGACGAAACGTCGCCTGGCGCGGCACGCGAAGACCCACACCGGCGAGAAAAACTATCAGTGCGACACTTGCGACAGGACTTTTGCGAGGAAAGACTATTTGTCGAGACATTTCGGATCGCACAGATCGCCCGAGAAGAATTTCAAGTGCGACATTTGCGATAAGAGCTTCGCGACTAAATATATTGTGGTGCGGCACGTTAGTGAAGTGCATTTGggcgaaaaaaattatagttgtGAAGTTTGCAAGAAGGGCTTCACGACGCAGTCTAGGCTGTTGTCGCACAGCAACAAGCACACTGGAGcaagaaatgtgaaatttgtaacaaatttttaa
- Protein Sequence
- MDSDVLQCAIPTTKCGVTIKEEPHETAQTSIPVDKTRNVSYRGIAPDDIRIKLELDDNADDSTNSCSNDRKPPIIDFTKNAENNEAKRPDVKSEVIPRRHKCGVCDKRFTSKTYARLHEKAHFDENGLECEPCGRRFVTKQQLSDHAQTHAGVKNFKCDTCGKRYIKKRTLAEHAKMHTLAKNHECEICNRRFKTKGIMSQHKKIHTVERNHECETCEKRFTLKINLRQHVETHSRGQSFECEVCDARFPTKRRLARHAKTHTGEKNYQCDTCDRTFARKDYLSRHFGSHRSPEKNFKCDICDKSFATKYIVVRHVSEVHLGEKNYSCEVCKKGFTTQSRLLSHSNKHTGARNVKFVTNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -