Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:1482806-1484608[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00029 0.021 16.3 2.3 2 23 162 184 161 184 0.96

2 12 5 3.5e+02 3.0 0.2 2 22 195 214 194 216 0.80

3 12 0.99 70 5.2 2.9 1 13 230 242 230 253 0.85

4 12 6.5e-05 0.0046 18.4 0.8 2 23 314 336 313 336 0.96

5 12 6.8e-05 0.0048 18.3 0.8 1 23 342 364 342 364 0.96

6 12 0.00034 0.024 16.1 1.8 1 23 370 392 370 392 0.96

7 12 1.4e-05 0.00096 20.5 1.4 1 20 398 417 398 418 0.96

8 12 0.00017 0.012 17.0 1.7 1 23 429 451 429 451 0.99

9 12 0.0042 0.29 12.7 2.7 1 23 457 479 457 479 0.97

10 12 0.0055 0.39 12.3 1.3 1 23 485 508 485 508 0.97

11 12 0.00012 0.0088 17.5 3.4 1 23 522 544 522 544 0.98

12 12 1.9e-05 0.0014 20.0 0.8 1 23 550 573 550 573 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00029	0.021	16.3	2.3	2	23	162	184	161	184	0.96
2	12	5	3.5e+02	3.0	0.2	2	22	195	214	194	216	0.80
3	12	0.99	70	5.2	2.9	1	13	230	242	230	253	0.85
4	12	6.5e-05	0.0046	18.4	0.8	2	23	314	336	313	336	0.96
5	12	6.8e-05	0.0048	18.3	0.8	1	23	342	364	342	364	0.96
6	12	0.00034	0.024	16.1	1.8	1	23	370	392	370	392	0.96
7	12	1.4e-05	0.00096	20.5	1.4	1	20	398	417	398	418	0.96
8	12	0.00017	0.012	17.0	1.7	1	23	429	451	429	451	0.99
9	12	0.0042	0.29	12.7	2.7	1	23	457	479	457	479	0.97
10	12	0.0055	0.39	12.3	1.3	1	23	485	508	485	508	0.97
11	12	0.00012	0.0088	17.5	3.4	1	23	522	544	522	544	0.98
12	12	1.9e-05	0.0014	20.0	0.8	1	23	550	573	550	573	0.97

Sequence Information

Coding Sequence: ATGGAAGGTACGTGCAGCATATGCCTAAAAAACCAAAACGATCTAACGTACACCGAAGAAACGAACGCCGACGACGTAAAGTGGAGCGCCAAGTTGACATCCTGCGTACCCGAGTTGGAATGGAACGAGTGCATGATCTGCCAGTCGTGCAAGAACAAATTGGAAATGGTGTGCGATTTTCGGAAGCTCTGCTTCCAGTCGTACGTCGTGCGCAAGCGGGGACTGGAACGCGACCTGAAATACGAAAGCGACCCGAACTCAAACGACGACATTTTAGACTCGGACGATTTGGATACGAAACTCGACGATGAAACGAAAACCATTGAGTCGTCGGTGGACGTGAAGTTCGAGGCGACCAAACTTCGAGACGTCAAGAGCTTCCAATGCAAAGTATGTATGGACGTGTTGGATAGTCGAAAAGCCTTGCTGTCGCACGTCGAAGCacacaatttcttaaaaatcgaCGGCAAAAGCGGCCAAGTCGTTTGTTTCCATTGCAACGAATCGTTTGCGGAAAAATCGTCGTTATCCAATCACATACAAGTTTGTCATGGCGGCGGCGGCGGAGACAAAGCTTTAAAGAGGTGCAAAATCTGCAACGGCGACTTCGACGATCGAGGACTCGAAAATCACTTGATAGACGATCACGGGATAGGTAAGGTGGTTTCGAGTCGTAAAATTAAGAAACATAAATGTGATAAGTGCTCGAGGATGTTCACGacggaaaaaatcaagaatattCATGTGACGAACTGTCACGGTGCGGAAAACGAAAGTAAAATAGGGATGACGTCGGAAGTAGACGTGACGAAGGAAAATTTGTGCTTCGATGATAATTGGGACGATTGCAACGTGGACATCGAAACCGTAACTAAAAAGACTGGGACGGAGAAACCCAAGTTGAAACGCGGCCGCAAACCCaaagagaaacaaataaacaaatgcgAGACGTGCAGCGTCGTTTTCACGACCAGGTATCTTCTAAACCGGCACGTGCGGAACGTCCACGCCACCGAGAAGCTCCACAACTGCGATATTTGCGGCCAGAAGTTCGCCAGCCCCGTTTACCTATCGGCTCATAAACGTTACCATTCGCGCGAGCGTCCGCACATCTGCTCGTTTTGCGGCAAGGGATACATAACGGCCAGCGATTTGTACCACCACGAGAAAATCCACGCGAACAAGCGAGCGTACAAATGCGAGAAGTGCCCGAAGGCTTTTAACACGTCGTCCGATTTGcataaacacaaaatttgcGTGCACGTCGACCGCAGCCAGTGGAAATACGTCTGCAGTTTTTGCGACAGGAGGTTCCCGCTCAAAACTAATTTGGACACGCACACGAAaacgcacaccggcgagagGAACTTTGCCTGTCACCTTTGCGAGCGTCGGTGTATTAATCGCTCGGTTTTATTGCGACACATAGAGTCCCACTCGAACGTGCGCTCGTTTCGGTGTTACGTCTGCAGTCAGGAGTACAAGTATCAAAAATCGTTGGACATACACATGACGAAGGCGCACGGGATCGGCGACGCCAAAATACCGGAGCGCGTCAAGAAATATTTCTGTCACGTTTGTCCCAAGTCGTACTTTGCGAATAACAAGTTGCAGAAACACATCAGGACGCACACCGGCGAGCGACCGTTCGCCTGCGAGCTCTGCGAAAAGAGATTCATCGATAAGTCGTACATGAAACAACACCTGAAGACGGCGCACAACGTTACTTTTATGATCGCCACGTAA
Protein Sequence: MEGTCSICLKNQNDLTYTEETNADDVKWSAKLTSCVPELEWNECMICQSCKNKLEMVCDFRKLCFQSYVVRKRGLERDLKYESDPNSNDDILDSDDLDTKLDDETKTIESSVDVKFEATKLRDVKSFQCKVCMDVLDSRKALLSHVEAHNFLKIDGKSGQVVCFHCNESFAEKSSLSNHIQVCHGGGGGDKALKRCKICNGDFDDRGLENHLIDDHGIGKVVSSRKIKKHKCDKCSRMFTTEKIKNIHVTNCHGAENESKIGMTSEVDVTKENLCFDDNWDDCNVDIETVTKKTGTEKPKLKRGRKPKEKQINKCETCSVVFTTRYLLNRHVRNVHATEKLHNCDICGQKFASPVYLSAHKRYHSRERPHICSFCGKGYITASDLYHHEKIHANKRAYKCEKCPKAFNTSSDLHKHKICVHVDRSQWKYVCSFCDRRFPLKTNLDTHTKTHTGERNFACHLCERRCINRSVLLRHIESHSNVRSFRCYVCSQEYKYQKSLDIHMTKAHGIGDAKIPERVKKYFCHVCPKSYFANNKLQKHIRTHTGERPFACELCEKRFIDKSYMKQHLKTAHNVTFMIAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -