Basic Information

Insect: Geotrupes spiniger
Gene Symbol: RREB1
Assembly: GCA_959613385.1
Location: OY390731.1:42111805-42121979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00021 0.015 16.7 1.1 1 23 62 84 62 84 0.96

2 15 0.00012 0.0082 17.6 0.2 1 23 95 117 95 117 0.97

3 15 3.5e-05 0.0025 19.2 4.1 1 23 123 145 123 145 0.99

4 15 0.0012 0.083 14.4 5.2 2 23 232 254 231 254 0.97

5 15 0.13 9.3 8.0 0.6 1 21 302 322 302 323 0.94

6 15 0.13 8.9 8.0 0.1 1 23 453 475 453 475 0.96

7 15 1.1e-05 0.00081 20.7 0.7 1 23 484 506 484 506 0.99

8 15 0.0015 0.1 14.1 3.1 1 23 512 535 512 535 0.97

9 15 0.0012 0.088 14.3 2.8 1 23 884 907 884 907 0.96

10 15 0.00087 0.061 14.8 0.4 2 23 1121 1142 1120 1142 0.97

11 15 0.22 16 7.3 6.3 1 23 1148 1171 1148 1171 0.97

12 15 0.11 7.6 8.2 5.0 1 21 1202 1223 1202 1226 0.95

13 15 2.3 1.6e+02 4.1 3.1 1 23 1280 1303 1280 1303 0.92

14 15 0.029 2.1 10.0 0.4 3 23 1350 1370 1348 1370 0.93

15 15 0.013 0.93 11.1 5.9 1 23 1376 1398 1376 1398 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00021	0.015	16.7	1.1	1	23	62	84	62	84	0.96
2	15	0.00012	0.0082	17.6	0.2	1	23	95	117	95	117	0.97
3	15	3.5e-05	0.0025	19.2	4.1	1	23	123	145	123	145	0.99
4	15	0.0012	0.083	14.4	5.2	2	23	232	254	231	254	0.97
5	15	0.13	9.3	8.0	0.6	1	21	302	322	302	323	0.94
6	15	0.13	8.9	8.0	0.1	1	23	453	475	453	475	0.96
7	15	1.1e-05	0.00081	20.7	0.7	1	23	484	506	484	506	0.99
8	15	0.0015	0.1	14.1	3.1	1	23	512	535	512	535	0.97
9	15	0.0012	0.088	14.3	2.8	1	23	884	907	884	907	0.96
10	15	0.00087	0.061	14.8	0.4	2	23	1121	1142	1120	1142	0.97
11	15	0.22	16	7.3	6.3	1	23	1148	1171	1148	1171	0.97
12	15	0.11	7.6	8.2	5.0	1	21	1202	1223	1202	1226	0.95
13	15	2.3	1.6e+02	4.1	3.1	1	23	1280	1303	1280	1303	0.92
14	15	0.029	2.1	10.0	0.4	3	23	1350	1370	1348	1370	0.93
15	15	0.013	0.93	11.1	5.9	1	23	1376	1398	1376	1398	0.98

Sequence Information

Coding Sequence: ATGGATCTGACGACTGAGCCTAACACCGCCATTGCCAAAGAAATAAACCAAAGTCTCCGCAGCGATTCCGGGTTTATGTCGGGTACGATCAACACCTCTTATCCGGAAGACGTAAGCCGCACCCGAAATAACGACAACGCTGATTCGGACAACAGAAGCGACTGCAGCACACCCGATCGCAAGTACCTGTGTCCGATCTGCGAAAAAATGTTGACTTCACAACACGAATTTACGCTGCACATAAGATCGCACAACAACGACACAGAATTACAGGACAAAGGGTTTGTGTGTAAGATTTGTTCGAAGGTTCTGAGCTCCAGCTCGAGTTTGGATCGCCATGTCTTGGTTCATAGCGGTGAAAGACCATTCACGTGTAGGTATTGTGGCGACACGTTCACAACGAACGGTAACATGCACCGACACATGCGCACTCATGCCTTTAAAAACGATTACGAATCGGATGGTACCTCTGACAGTAGTACCAGTTCAAAGAATATAGAGTTCAACAACAACAAGGTCGAAAAGAAGAGAAAATTGGAAGCGATAGATGAATACAAGCACGTCAAGGTGAAAATCGAAGATGACGCCAACGGAAATAACCATTACAAGTGCCCAGTTTGCGAACGCGACGACTTCAACTCGATACAGACTTTAGAACTTCACCTTGAAGACAACCACCCCGACTATCCTGTTAAGTGCCATTTTTGCAATCAGACTTTTGCGAACAATAAACATCTAAACCTGCATAAGAACACCGTACACGCCGAAGAGAACGGTAAATTGAAGGTGGAAAAGGTCGGCTTCAAAGATTTGAcgtttgttgatttttctatGAAAAAATTCCCACAAATTGCTCGACACGAATGCGAAAAAAATTTGCACAGGGCATCAACcggtttaaaatttcaatgtacaaaatgttcgcgggctTTTCCTTGCGCAAATTCGTTGGAAATCCATCAAAATGAATGTTGCAGTGATGTGACAAACGAAAATCCATTCGATCCTAACAAGAAGAAGCTAACTGACCGCGATATAAGACGTGTTGATTTTTTCTCTCGTTTAGATCTGCAGGACAACTCACCTGAAAAGATCACTTCGCTTGAAAATAACCTACAGCACAAACTGTTGGAGACGATCAAAGCGATCGATAGCAGTAAAGATCTAGCAGACATTCCATCGATTATTTCAATGACAACGAATGGAAGTTTGTTGCAATACTTGCATTCGAAAAACGATATAGTTCCCATGCCTCAGTTTGGTAGTAACCATGAAATGCAGCCTGAAAAATCCGAAGAAGAAGAAGCCCAAGATATTTTTGCTGTtgaatttcgaaaaatgaagcTGCGTGGCGAATTCCCGTGTCGTTTGTGCACCGCCGTTTTTCCCAATTTACGGGCATTAAAAGGCCACAATCGCGCACATCTAAACGGCAACAATAATGGCACATACCGTTGCAATATGTGTCCTCATTCGTCTGTGGATAAAGCTGCTTTGATACGTCACATGCGTACCCACAACGGCGATCGGCCGTATGAATGCTCGTTGTGCAATTACGCCTTTACCACAAAGGCGAATTGCGAAAGGCACTTGCGCAACAGACACGCCAAAACAACGCgcgaagaagtaaaaaaatcaattatttaccATCCATCTGAGGATCCAACGAACGACGACATCAACAAACTTACAGCTAGGGATGACACAAAAAAACTGAACGTCAGTCTGTGTTCGATCGATTCGAACGATTTAACTCCCGAGAAAATCAGAAGTTCCACACCAAAAAGCCTAACGCCGGATGCGTGtccaattaaaaaagaaactacCCCGGTTTTGCATTACCAACCGCTGAAAAACGCGCACAGTATCAACGACATTATACAAAGTGAAaacataaaatctttaaaagaCCATGGCTTGAAAAGCGATCTTTTTCCATTCCGGCGGACCTTCTTCGCAGAAAATGTCACCAATACTTCGACGCCCCAAAAACCGAAAATCCACCTAAAAAATTTCGAAGCTCTTAAACAAATACCCGAATATGACCATGAATCGGAAGAGGATGGTTACAAAAGCGACGAATATCATTCGGAAGAGAAACCGATCGACTTGAgcaagaagaaaaatacggTAGAGAAAGATCAACAAAAGGAAGATATGCCACATGATTTGACGAGAAAGATACCGAACGTCCCGCAATTCGGTGTCAACGAAATGTTGGCCCAATTCAAACATTATCCGTCCCCGTTCGGCTTGTTccgaaattttccaaattggTCGCCGTTTCCAATAAACCCTTTGTTGTTCTCCTCCATTCAACCGACCGTATACCCGCAAGAACAAGACATTAAGCGTTTACAGCTCAGTCTATGCGGCGGTGGAATGATCAACAACCTTCCATACCAGCAACCAATGCCAACGGATTTCAAACCGGAACTAAAATATCCAGAACCGAAATACCACAAAGAAGACATTAAACCTCTCAGTTTGAATATCGAATCCAATTACACCGATATGGGAAAGATTCAAAGTCCTGTAACTCAGCCAACAGTGGATTTGGTGCAATCTCCGAATTCAGTGAAGATGGTCATAAAGAACGGCGTCCTGATGcctaaacaaaaacaaagacgATATCGGACCGAGCGACCGTTCTCCTGCGAACATTGCTCAGCCAGATTCACGTTAAGATCGAACATGGAACGTCACATCAAGCAACAACATCCGCAATTTTGGTCGCAACGACAACGGTCCAATATCGGCAATCCCGGCCGGAAAACTCAACCGATGCCGACGGGCCTCAACATATCTAATTTTGATGCGCCAAAAATCGGACAAGATTACGAACCTAAAGACAACCATCATATATCAGAGAAGCTCAAGTACGCCATATTGGCACAACGTTTGCGAGCCTCCACTCAAGAATACAAACATTTGGGGTCAGGAAAAAAGGAAGACGAGGAAGACTTGCCGTTGGTCATTGATGAGCACGATGAAAAGACGAACGAAAGTAAACCAAAGGTTTGCCTTTACGATGACAAATCAACCAGGTCGACTTTTCCAAATCTTGAATCATTATTACCCGTTCGAATTGGTAAGAACGAAGATGCCCAAGATTTAGTGCCCGTATCACGACTCTTGGACAACGCGTCTCAACAGCCGTTCAAGGAGTATTTCCGCGGTGACGGGGAAGAACATGAAGCGGAAGGTGTCAGCGAAGAGGACGAAGAAGGATTAGTTGCGAGTGGTAGCACCAGCGAAGGAAATTCTGGAACTGATGAAAACAAatCCGAATCGGAAAACACCACCAACCAAGGCCCGGTAAAAAAGAAGTCCGCGTATTCTCTGGCACCAAACAGGGTTAGTTGTCCCTACTGCAGCAGGAAATTCCCGTGGACTTCGTCGTTACGCAGACACATCCTGACACACACAGGTCAGAAACCATTTAAGTGCAGCCACTGCCCTCTGCTATTCACAACTAAGTCGAATTGTGACCGCCATTTGTTGCGGAAACACGGCAACTCGGCCACAACCATCACCAACGACTCTgccaataacaacaacaatgtttcaaattatttgatgAGGAACGTCCCAGAACGCCCATTCAAGTGCTCAACCTGTCCCAGCAGCACTTTTTCGACTTATTCTAACTTGAAAAAGCATATGAACTGCAAGCACGGTGCTCGAATGGATGACAAGGCGCAAGGTTACGAGGCCGGAAGCTCGGAAGACGAAAAACAAAACTTGCATGATCATAAAACCGAATGGGAAGTGCAAATATCACACGGTAAGAGTTCCGGCGATAACCAAAACGTTCAGAGCAACTCTGACTTGCCGTTTAAATGTCACTTATGCGACGGTTCCTTCGGCGACCGTCAGGACTGTCTCGAtcatattaaagaaaaacatcCCTCGGAATATGATTTATTGATGACGAAAAATGCTTTGGATAACAATGCGTCAACGCCAGAGGAGACTAACAATCACGACGATGAAGACAACGAAATGCGAGGCAAATTTCCAGATTATTCGAACCGTAAAGTCATCTGCGCGTTTTGCATGCGCAGGTTTTGGTCTGCGGAGGATTTACGTCGACACATGCGCACTCACACCGGAGAACGCCCTTTTAGCTGCGACATTTGCCGCCGAAGATTCACCCTAAAACACAGCATGTTGCGACACCGCAAGAAGCATAACCTAACGTGCGAGAGCGATCATATGAACAGCGACGAAGACAACATAAATCCCAGTTTGGAAAAGTTAAAACAAAGCATGGCCAGATTAACGGAGAAGACAGACGAATCTGACTGCAACGAAGGTAATGACTTGCTGGGAAACTTGCTGGGCATCAAGGACCAAATGATCGATCAAGTGTTAGGAGCAACCCCGGACGACGCAGCGAAGCTACTTGGAGTCAAGAACGGAAACTAA
Protein Sequence: MDLTTEPNTAIAKEINQSLRSDSGFMSGTINTSYPEDVSRTRNNDNADSDNRSDCSTPDRKYLCPICEKMLTSQHEFTLHIRSHNNDTELQDKGFVCKICSKVLSSSSSLDRHVLVHSGERPFTCRYCGDTFTTNGNMHRHMRTHAFKNDYESDGTSDSSTSSKNIEFNNNKVEKKRKLEAIDEYKHVKVKIEDDANGNNHYKCPVCERDDFNSIQTLELHLEDNHPDYPVKCHFCNQTFANNKHLNLHKNTVHAEENGKLKVEKVGFKDLTFVDFSMKKFPQIARHECEKNLHRASTGLKFQCTKCSRAFPCANSLEIHQNECCSDVTNENPFDPNKKKLTDRDIRRVDFFSRLDLQDNSPEKITSLENNLQHKLLETIKAIDSSKDLADIPSIISMTTNGSLLQYLHSKNDIVPMPQFGSNHEMQPEKSEEEEAQDIFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYRCNMCPHSSVDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNDDINKLTARDDTKKLNVSLCSIDSNDLTPEKIRSSTPKSLTPDACPIKKETTPVLHYQPLKNAHSINDIIQSENIKSLKDHGLKSDLFPFRRTFFAENVTNTSTPQKPKIHLKNFEALKQIPEYDHESEEDGYKSDEYHSEEKPIDLSKKKNTVEKDQQKEDMPHDLTRKIPNVPQFGVNEMLAQFKHYPSPFGLFRNFPNWSPFPINPLLFSSIQPTVYPQEQDIKRLQLSLCGGGMINNLPYQQPMPTDFKPELKYPEPKYHKEDIKPLSLNIESNYTDMGKIQSPVTQPTVDLVQSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRSNIGNPGRKTQPMPTGLNISNFDAPKIGQDYEPKDNHHISEKLKYAILAQRLRASTQEYKHLGSGKKEDEEDLPLVIDEHDEKTNESKPKVCLYDDKSTRSTFPNLESLLPVRIGKNEDAQDLVPVSRLLDNASQQPFKEYFRGDGEEHEAEGVSEEDEEGLVASGSTSEGNSGTDENKSESENTTNQGPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTITNDSANNNNNVSNYLMRNVPERPFKCSTCPSSTFSTYSNLKKHMNCKHGARMDDKAQGYEAGSSEDEKQNLHDHKTEWEVQISHGKSSGDNQNVQSNSDLPFKCHLCDGSFGDRQDCLDHIKEKHPSEYDLLMTKNALDNNASTPEETNNHDDEDNEMRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNLTCESDHMNSDEDNINPSLEKLKQSMARLTEKTDESDCNEGNDLLGNLLGIKDQMIDQVLGATPDDAAKLLGVKNGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -