Gspi026938.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390738.1:32610700-32613875[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.72 51 5.6 0.3 6 21 12 27 7 28 0.85 2 13 0.24 17 7.1 0.0 2 20 34 52 33 54 0.92 3 13 1.1e-05 0.00075 20.8 2.5 1 23 318 340 318 340 0.99 4 13 0.00052 0.037 15.5 0.8 1 23 351 373 351 373 0.98 5 13 0.15 11 7.8 1.3 1 23 404 425 404 425 0.87 6 13 1.5e-07 1.1e-05 26.7 0.9 1 23 431 453 431 453 0.98 7 13 0.075 5.3 8.7 1.0 1 21 459 479 459 480 0.93 8 13 0.0003 0.021 16.3 2.1 1 23 487 509 487 509 0.98 9 13 2.5e-06 0.00017 22.8 2.9 1 23 515 537 515 537 0.97 10 13 0.0029 0.2 13.2 6.5 1 23 543 565 543 565 0.98 11 13 4.4e-05 0.0031 18.9 0.2 1 23 571 593 571 593 0.98 12 13 2.4e-05 0.0017 19.7 0.2 1 23 597 619 597 619 0.98 13 13 0.0015 0.1 14.1 0.5 1 23 627 649 627 650 0.95
Sequence Information
- Coding Sequence
- ATGGGTTCAGTTCAGGTGGAATGTCCATTATGCTGCAACGAGGTGTTTACGTCCTATAACGGCCTAAAATACCACTTGCTCAGCGTCATCGACAACTTAACGTGCACGGCGTGCTCGAAAAGGTTCGATAGAGTCGTCGACCTGGCGGAACATTTGGGCAGAGAATGCAAGGATGACGAAATTGACGACATCGAGGAGGAGTTGCACGAATCGACTATAAAATCGGAATTCATAAACGTAGATTATGAAGAGGCGTTGAACAAGAGCATATTGGCGCAAGCACTTATGAAGAAAACTCGCGTGGAAATTGACAACTCGACCAAAACAATCGTGGTTGGCGAAAGTAACGCAGAAGAGGAGAACGCGACTATGGATGTGGAAGAAGCCGCAAAGACCACGAGCGAGGGTCTACGGAGCGaggatatttattattgttcgaGTTGCGCTACCAGTTTCACATCGATTAATGAACACTTGGACAAATATCACGAAGGGCAAGAGGTTTATATTGAAGATGGTGATGGACCAAGTGAAGGAACGACCTCGAGCATGGATGACAGGTCGTTCTTAGTGGTACAAAATAATAAGGCGGAACAAGATGACGATTCGGACAGCGAAGAACTGGTTGATATGGCGGACAACAGTGAACTCTACAACACGTTAAAACAGGAGGAAATTTTGGATAAAAATGGTCGATTATACACACGAAAGGTGGTGCAGATCGAGAAGTTTTGGGATGAGGGGGAGAAGGGTGTTTCAGGCAGGGAGCCGCCAGTAACGCAGAAGTACATCTTGGACAATGGCAAGGCTGTCAAGGTGGAGGGAACCATCGAGGGCGTAGACGAGAAAAACATATTGAACATACACCAGTGTTCGTCGTGTTCTTTGCACTTCTGCAAGTTGGAGCAATATTACAAACACAAGTGCAAtccaaaagaaaattcaaatgattACAAGTGCTCGAAATGCGATTCTAGTTTTTACAGTGCCCGGTCACTAAGCACACACATGAGGACGCATATGAGTTCGGCTGTTGAGCACATGGGTCCTTATATATGCGAAGTGTGCACAACGGAGTTTCCCTCGTACAAATCGTTGAGGTTACACAAACGCATGCACGATCCAGTAAAAGTCAAAGAAATTGAGCCACCGGTAACTTATGGCATAAACGGTGGCGGCGCTCCAGAGAAGTCCGGTAAAAGGGAAATGTTCAAATGCCAAATATGCGAGAAAATGTACGATAAGCAATATGAAGAGGTGCATATGAAGTCGCACAGCAACGAAGTGAAATATGACTGCGAAATCTGTAACAGGAAATTTTACACTCAGTCGAATTTGGAAATGCACATGCGTGTCCATACGAACGGTAAAAAATTTGCTTGTTCGTATTGCAAGAAAGGTTTCTTGAACTACGAGAGCCTACAAGAACACGTGAAACATGTCTGCCAGAGCAGGCCTTACGAATGCCAATATTGCGGTCGAAGATTTATGAGACCGCACGAGAAAGTCAAACATGAACGTATCCACACTGGTGAAAAACCCCACATTTGCGAAATCTGTGGAAAGGCATTCAGAGTCAGTTACTGTTTAACTTTGCACATGCGAACGCATTCAGGGACGAGACCTTACCAGTGCGCCCACTGTGGAAAAAGATTCAAAGCCCACAGCGTCTACAACCACCACTTGCTGACGCATTCTACAGTCAGAAACTACAAATGTCCTTACTGCCCAAAAGCCTTTAAAACCGGGGTGCAACTGGCCGGCCACAAAAACAGTCACATAAAACCATTCACCTGCACCGAATGCAATCGCCCATTTGCCTCACTGTATGCAGTCAGAGCGCACATGGAAACTCACAAACGTGAAAATAACTTGAAATACAGTTGTTATTTGTGCGGGGCTACTTACGCTCGGGCATTTGCTTTACGTGATCACGTTAAAGAGCACCACGCTGATGACAGTTGGGATAAAAATGTTGATGGGGAACTTTTAGAAACAGAGTTTGAAATGGTGGCCGAAGGAGTAAATGCTAGTAATGCTATATTAAATGAAGGTACAAAGAACGACGTCTTGGTTGTGTTGGAACAGGACGAAATGGGAAATGTTGAGATGGTCGAGGAGGTTGCGacagttaattaa
- Protein Sequence
- MGSVQVECPLCCNEVFTSYNGLKYHLLSVIDNLTCTACSKRFDRVVDLAEHLGRECKDDEIDDIEEELHESTIKSEFINVDYEEALNKSILAQALMKKTRVEIDNSTKTIVVGESNAEEENATMDVEEAAKTTSEGLRSEDIYYCSSCATSFTSINEHLDKYHEGQEVYIEDGDGPSEGTTSSMDDRSFLVVQNNKAEQDDDSDSEELVDMADNSELYNTLKQEEILDKNGRLYTRKVVQIEKFWDEGEKGVSGREPPVTQKYILDNGKAVKVEGTIEGVDEKNILNIHQCSSCSLHFCKLEQYYKHKCNPKENSNDYKCSKCDSSFYSARSLSTHMRTHMSSAVEHMGPYICEVCTTEFPSYKSLRLHKRMHDPVKVKEIEPPVTYGINGGGAPEKSGKREMFKCQICEKMYDKQYEEVHMKSHSNEVKYDCEICNRKFYTQSNLEMHMRVHTNGKKFACSYCKKGFLNYESLQEHVKHVCQSRPYECQYCGRRFMRPHEKVKHERIHTGEKPHICEICGKAFRVSYCLTLHMRTHSGTRPYQCAHCGKRFKAHSVYNHHLLTHSTVRNYKCPYCPKAFKTGVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRENNLKYSCYLCGATYARAFALRDHVKEHHADDSWDKNVDGELLETEFEMVAEGVNASNAILNEGTKNDVLVVLEQDEMGNVEMVEEVATVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -