Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:2512175-2515131[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00026 0.018 16.5 4.8 1 23 146 168 146 168 0.97

2 15 0.00084 0.06 14.9 1.9 1 23 174 196 174 196 0.98

3 15 0.00051 0.036 15.5 1.7 1 23 202 224 202 224 0.98

4 15 0.044 3.1 9.5 2.7 1 21 230 250 230 252 0.93

5 15 3.9e-05 0.0028 19.0 4.0 1 23 258 280 258 280 0.98

6 15 0.012 0.84 11.2 1.6 2 23 287 308 286 308 0.96

7 15 0.011 0.81 11.3 3.7 1 21 314 334 314 336 0.95

8 15 4.5e-05 0.0032 18.9 5.7 1 23 342 364 342 364 0.99

9 15 3.6e-06 0.00026 22.3 0.5 1 23 370 392 370 392 0.98

10 15 0.0045 0.32 12.6 7.4 1 23 398 420 398 420 0.98

11 15 0.0021 0.15 13.6 3.5 1 23 536 558 536 558 0.98

12 15 0.0052 0.37 12.4 2.7 1 21 564 584 564 586 0.94

13 15 0.00012 0.0086 17.5 3.2 1 23 592 614 592 614 0.98

14 15 1.2e-06 8.2e-05 23.9 2.5 1 23 620 642 620 642 0.98

15 15 4.3e-05 0.003 18.9 4.5 1 23 648 670 648 670 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00026	0.018	16.5	4.8	1	23	146	168	146	168	0.97
2	15	0.00084	0.06	14.9	1.9	1	23	174	196	174	196	0.98
3	15	0.00051	0.036	15.5	1.7	1	23	202	224	202	224	0.98
4	15	0.044	3.1	9.5	2.7	1	21	230	250	230	252	0.93
5	15	3.9e-05	0.0028	19.0	4.0	1	23	258	280	258	280	0.98
6	15	0.012	0.84	11.2	1.6	2	23	287	308	286	308	0.96
7	15	0.011	0.81	11.3	3.7	1	21	314	334	314	336	0.95
8	15	4.5e-05	0.0032	18.9	5.7	1	23	342	364	342	364	0.99
9	15	3.6e-06	0.00026	22.3	0.5	1	23	370	392	370	392	0.98
10	15	0.0045	0.32	12.6	7.4	1	23	398	420	398	420	0.98
11	15	0.0021	0.15	13.6	3.5	1	23	536	558	536	558	0.98
12	15	0.0052	0.37	12.4	2.7	1	21	564	584	564	586	0.94
13	15	0.00012	0.0086	17.5	3.2	1	23	592	614	592	614	0.98
14	15	1.2e-06	8.2e-05	23.9	2.5	1	23	620	642	620	642	0.98
15	15	4.3e-05	0.003	18.9	4.5	1	23	648	670	648	670	0.99

Sequence Information

Coding Sequence: atgagttgCAATAAgTTTCCCACAGATTCCGAACAACGCAAGCAATGGTTGATCAATTGCAGGAGGCTGGATTGGATTCCTACACAAAACGATCGACTGTGTTCGtatCATTTTGAAGAGAACCAGATTGAACAAAATCGTGCGGATGGAAAGAAACTGTTGAGACCGTTCGCAACGAAATTAGTCGATGGTTTTAGAAATGTGCAGAagcAGCCTACATTGGAGGTGAGAAATATGAATGGAGATAATCCCACTGGTGTAGTTCTTGAAGTAAAACCAGAGCCGACTGAAATTGCCTACTCGTCGCAGTCTGAAGCGTCTTTCCaatgttgtaattttgaaaacgttGATGTAAACGCCGTCGTAGTCAAAGAAGATGAAAACGTGGCTTTCATTCCAAAACCGGAAGCGTCGACGAAAAACCGACCGAAAACtcacaaatgcgacgtttgcacCAAGAGCTTCAACCGAAGGTACAACATGTTGCAGCACACGAAGCTccacaccggcgaaagaaaccACAAATGCGACATCTGCTCGAAGTCCTTCCAAACCAAGCCCGTCTTACTGCAGCACGTAAAGTCGCACACGAATGAAAGAAACCACAAATGCGACGTGTGCGCGGCGAGCTTCAAAACGAAATCGGAGGTCTCCAAGCACGCGCGGCGCCACATCGACGAGAGAAATTACGAATGTCGCGTCTGCGCGAAGACTTTCAAGACGAGGAGCGACGCGTCCGTGCACACGAAGTGCCACGCCGTCGAGCGAAACCACAAGTGCGGCGTCTGCAGTAAAAGCTTCAAGACGAAGTCGGAAATCACGAAGCACGTGAAGCGACACACTGTGGAGCGAAACAGCGTCTGTTACGTGTGCGCCAAGCGTTTCAAGACGAGGCACGACGTCGTGTTGCACTTGAAGTCGCACACCGACGAACGCAACCACAAGTGCGACATTTGCGCGATGCGTTTTAGGACGAGGAACGAGCTGGTGAAGCACGTCAGGTGTCACAGCGACGAGCGGAATTACAAGTGCGATGTTTGCGAGAAATGTTTCAAGACGAGCAACCACGTGGTGCAGCATATGAAGTCACACAGCGACGAGCGGAATTATAAGTGCGACGTTTGCGGCAAGAGCTTTAAAATGAGGAACGCGATGGTGCGGCACATGATATCGCACAGCGACCAAAGGAAccacaaatgcgacgtttgcgcCATGTGCTTTAAGACGAAACACGTCTTGGTGAAGCACATGAAGCGACATAAATGCGAGATTTGCATCAGGAATCTCAAAGCGAAGAATAATACGGCGCAGCGTATGGAAAGTCACAAAGAACATGCGATGCAAAAAGTCTTGTACGGCGACCTGTTGTATGACGAAGATAGAAAAACGAAGCAGAGTATAATTGAAGGATACGATATAAACCTCAAACAAGAAATTGTGGAGATGAACGACGCAAGTGCCCAAGAGGAAAATATCTTGGATTCAAATGTAAACAATTCCAATGACATTTTACTCGAAGCAAAACCAGAACCAACTGAACTTGTCTACTTGACACAGTACGACTGCACATCTTCACATCGTCACGTTAATGAAACGCAATCCGAACACAAGTGCGACGTTTGCTCCAGGTCTTTCAAAACGAAGGTGATTTTGTCGAAGCACCTGCAACGTCACACCATCGTGAAGAATTACCAGTGTGAAGTTTGTGCGAAACGTTTTAAGACGAAGGGCGAGGTGTCGAAGCACGTGAAATGTCACAACGACCAAAGGGCgcacaaatgcgacgtttgcgcGAAGAGTTTTAAAACGCGGGACAAGGTGACGAACCACATGAAGCTCCACACTGATCAGAGGAATTACAGGTGTGACGTTTGCACCAAGGGTTTCAAGTCTAGGAGCAATCTAATGGCGCACATGCAACACCACACCGATGAGAGGAAGTACGAATGCGACGTTTGCACCAAGAGGTTTAAAACGAAGTGCAATATGGTGCAGCACATGAAGTCTCACGCCAATGGGAGAAAGCGCTACGGAAGAATGCAATGTGAACATAGAGGAGGCGTTTTGGGGATTGAAGATGTGCGggGTGTAATTGAAAGTAAACCCTTGGAGACTATGAACGaaaatcattttcatcttcCAATGATGGATGGACAACCCAAGTCAACGGAAGCGATCTATTTATGCCAATCATTCAAGACTGATGttaaaattgaagaagatttGAAATCCATGAATATGGTCGGTGTAAAACtagaattttcaaatgcaaatattgagGAGGTCACGTGA
Protein Sequence: MSCNKFPTDSEQRKQWLINCRRLDWIPTQNDRLCSYHFEENQIEQNRADGKKLLRPFATKLVDGFRNVQKQPTLEVRNMNGDNPTGVVLEVKPEPTEIAYSSQSEASFQCCNFENVDVNAVVVKEDENVAFIPKPEASTKNRPKTHKCDVCTKSFNRRYNMLQHTKLHTGERNHKCDICSKSFQTKPVLLQHVKSHTNERNHKCDVCAASFKTKSEVSKHARRHIDERNYECRVCAKTFKTRSDASVHTKCHAVERNHKCGVCSKSFKTKSEITKHVKRHTVERNSVCYVCAKRFKTRHDVVLHLKSHTDERNHKCDICAMRFRTRNELVKHVRCHSDERNYKCDVCEKCFKTSNHVVQHMKSHSDERNYKCDVCGKSFKMRNAMVRHMISHSDQRNHKCDVCAMCFKTKHVLVKHMKRHKCEICIRNLKAKNNTAQRMESHKEHAMQKVLYGDLLYDEDRKTKQSIIEGYDINLKQEIVEMNDASAQEENILDSNVNNSNDILLEAKPEPTELVYLTQYDCTSSHRHVNETQSEHKCDVCSRSFKTKVILSKHLQRHTIVKNYQCEVCAKRFKTKGEVSKHVKCHNDQRAHKCDVCAKSFKTRDKVTNHMKLHTDQRNYRCDVCTKGFKSRSNLMAHMQHHTDERKYECDVCTKRFKTKCNMVQHMKSHANGRKRYGRMQCEHRGGVLGIEDVRGVIESKPLETMNENHFHLPMMDGQPKSTEAIYLCQSFKTDVKIEEDLKSMNMVGVKLEFSNANIEEVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00740904;
90% Identity: iTF_00740904;
80% Identity: iTF_00740904;