Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390737.1:8446832-8452078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.17 12 7.6 1.0 1 21 160 180 160 183 0.79

2 10 4.7e-05 0.0033 18.8 0.1 1 23 189 212 189 212 0.98

3 10 2.6e-06 0.00018 22.8 0.6 1 23 218 240 218 240 0.96

4 10 1.6e-07 1.2e-05 26.5 3.0 1 23 246 268 246 268 0.98

5 10 8.4e-07 5.9e-05 24.3 0.1 1 23 274 296 274 296 0.97

6 10 0.00022 0.016 16.7 3.3 1 23 302 324 302 324 0.97

7 10 8.6e-05 0.0061 18.0 2.7 1 23 467 489 467 489 0.97

8 10 0.00039 0.027 15.9 6.7 1 23 495 517 495 517 0.97

9 10 1.2e-06 8.1e-05 23.9 2.1 1 23 523 545 523 545 0.98

10 10 2.9e-06 0.0002 22.6 2.6 1 23 551 573 551 573 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.17	12	7.6	1.0	1	21	160	180	160	183	0.79
2	10	4.7e-05	0.0033	18.8	0.1	1	23	189	212	189	212	0.98
3	10	2.6e-06	0.00018	22.8	0.6	1	23	218	240	218	240	0.96
4	10	1.6e-07	1.2e-05	26.5	3.0	1	23	246	268	246	268	0.98
5	10	8.4e-07	5.9e-05	24.3	0.1	1	23	274	296	274	296	0.97
6	10	0.00022	0.016	16.7	3.3	1	23	302	324	302	324	0.97
7	10	8.6e-05	0.0061	18.0	2.7	1	23	467	489	467	489	0.97
8	10	0.00039	0.027	15.9	6.7	1	23	495	517	495	517	0.97
9	10	1.2e-06	8.1e-05	23.9	2.1	1	23	523	545	523	545	0.98
10	10	2.9e-06	0.0002	22.6	2.6	1	23	551	573	551	573	0.97

Sequence Information

Coding Sequence: ATGGGCTCATCGGACGAGTGGAAAGGTTACGCAACTATATGCAGATTGTGTTTACATAGGGACGGCTTCATGTTGGGAATATTTAATCACATACAAGGCAAAGAGAAGAGCATTTATAAGAAAATCATGGATTGTACGGCGCTAGAGATATCATTTGGTGATGGATTGCCGACGTGCATATGTCACCGTTGTTTGTACAAAATCGAATTTTGCCTAGACTTTCGACAACAATGTTTCGTCTCTGACGCGACGCTTCGGCAAATCAGCGGCTTGGCCACGAAACAATTGGAAAACGGCGCAGCTAATTTTATCAGTAACGACATAGGTTTAAGTTGCGGCAACGAAGAGAACGACGTCGTCATGGTAGTTGACCCCCACGCTTTGGATTACGATTCCGAGTACGAAACGGACACCAATGAGCATCACAGCGAGAACGAAGACTTGGAGACGAACGACTTGCAACAATTTAGGAACGTATTTCTGTGCAAGTACTGCGACCAGGCGTTCACCGAACGATCAGAATGCGCCCTGCACGAAAACGCGCTGCACAACACTTCAGTTCCGTACACGTGCAACGAATGCGACATGGGATTTGCCGATCGGGTGAATTACTCCGCGCATTTAAAATCCGTGCATCAAAACGACAAGCCCTACAACTGCCCCCAGTGCGAAAGGACTTTTGCCCGACGTTCCGATCTGCGCAAACACACCGTCGTCCACACGGGCATCAAGCCATTCACTTGCACGGTGTGCTTCAAGTCGTTCTCGAGAAACACGAACCTATCGAAACACATGCGGATCCATTCCGGGCAAAAACCTTTCGTTTGTCCAAAATGCCCAAAGACGTTCATCTCAAAAGGAGACCTCACAAGGCACGCGATAATTCACTCCGGGCAAAAACCGTTCGCCTGCAATTATTGCCACCTGAGTTTTGGAAGACGTGACAAGTTGCTTCGACACGAAAAGCGCCATTTTCCGCAAGAAAACACCAAAGACAACAGCGAAGAGTTGCAAATGCTCAGAGAGAGTTTGGCCCTCAACGATTATCACTATGTGAAGGACGAAGCGATGGAGAACGGCGGCTCAAATGGAATCGAACACGAAAAGTCCAGTGAGTGGGCAAGCTCCGAAAATATGGTAATTAATTTGGATCCCTTCAATCACAACAGTTATGGGAACCCGGAAAGCACGCCACGTAGTGAGGCAAATCTGGACTTGGAAGGTAATATGGAAAACGAGCTGCCAAGAGTGCCTGATCACATTCGAGCTGAACTAGGAGAAAATATCGATAATAACGACTTACCACCAGTTCCTGAACATATAACCGGAGATAGTTTTTCTGACGCTGCGCTGGCTAATATAGAACTTCCTCTAAATTCATCGGATAAACTCACAAGATACCCGTGCCACACGTGTCACAAACGTTTTTCGAGTATAGAAGGTCTACGTCTGCATATGGGAATGCACACTGGTAATCGTCCCCATCACTGTCACATATGCAGTAAATCTTTCATGAGGAAACGAGAGTTAGATAGACACATTGCCACACACACCGGAATGAAACCTTTCAGGTGCACGAGTTGTGATAAGAGGTTCGGACGTAAAGACAAATTGGTCAGGCACATGCGAATTCATGACGTCAATAGGGAACACATCTGTAGCATATGCGGCGCGTCATTTAATAGGAAAGACGGTTTGTCGCACCACATGAAGACACACGTGAAAGACGAAGCcgagttattaaatattgtttaa
Protein Sequence: MGSSDEWKGYATICRLCLHRDGFMLGIFNHIQGKEKSIYKKIMDCTALEISFGDGLPTCICHRCLYKIEFCLDFRQQCFVSDATLRQISGLATKQLENGAANFISNDIGLSCGNEENDVVMVVDPHALDYDSEYETDTNEHHSENEDLETNDLQQFRNVFLCKYCDQAFTERSECALHENALHNTSVPYTCNECDMGFADRVNYSAHLKSVHQNDKPYNCPQCERTFARRSDLRKHTVVHTGIKPFTCTVCFKSFSRNTNLSKHMRIHSGQKPFVCPKCPKTFISKGDLTRHAIIHSGQKPFACNYCHLSFGRRDKLLRHEKRHFPQENTKDNSEELQMLRESLALNDYHYVKDEAMENGGSNGIEHEKSSEWASSENMVINLDPFNHNSYGNPESTPRSEANLDLEGNMENELPRVPDHIRAELGENIDNNDLPPVPEHITGDSFSDAALANIELPLNSSDKLTRYPCHTCHKRFSSIEGLRLHMGMHTGNRPHHCHICSKSFMRKRELDRHIATHTGMKPFRCTSCDKRFGRKDKLVRHMRIHDVNREHICSICGASFNRKDGLSHHMKTHVKDEAELLNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466665;
90% Identity: -
80% Identity: -