Gspi007247.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390732.1:33044838-33047813[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00023 0.016 16.6 1.8 1 23 140 162 140 162 0.94 2 15 0.0023 0.16 13.5 1.2 3 23 170 190 169 190 0.99 3 15 0.00019 0.013 16.9 0.1 1 23 293 315 293 315 0.98 4 15 0.0057 0.4 12.2 0.1 1 23 321 344 321 344 0.97 5 15 1.7e-05 0.0012 20.2 3.9 1 23 368 390 368 390 0.97 6 15 0.013 0.88 11.2 0.0 1 23 403 425 403 425 0.95 7 15 2.1 1.5e+02 4.2 1.1 1 23 431 454 431 454 0.95 8 15 0.14 9.6 7.9 4.0 2 23 462 483 462 483 0.90 9 15 6.5e-05 0.0046 18.4 4.3 1 23 489 511 489 511 0.98 10 15 0.072 5.1 8.8 0.2 2 23 517 538 516 538 0.95 11 15 7.6e-06 0.00054 21.3 0.5 1 23 546 568 546 568 0.98 12 15 0.0073 0.51 11.9 0.2 3 23 576 596 574 596 0.97 13 15 0.00023 0.016 16.6 0.3 1 23 602 624 602 625 0.95 14 15 0.067 4.7 8.9 1.5 1 23 639 661 639 661 0.96 15 15 0.00079 0.056 14.9 0.1 1 20 968 987 968 990 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAAGGTTTTGCCTTGGCGTGGGAGGACGCCGTTTCGGTGGGTCAAGAAGAGGAAGTCATTTGCGGTATAGAAAACGAAACAATTCTATCAACACATACGAACGAGTTTGCCGATGTTTGTGAAGAAGTTATTGTTCAAGATAACAGTGAGCATCATGCAGAAGGAGAAATTTCTGCTGATAATGTGATGTACATAACTGATGACAATGTCCTCATCATGCAACCAGCTCCACAAACTCCATTTATCAACTGTCATGTAACGGAAGAAATTGTAAGTGAACAATGGAACGAAAGTTGTCCAGAAATAGTTGTGGGTTCGGAAGAACACGTTGGCGAAACAGAGGAGCAAGCAGATGAAGATGTGGTCATACCACTACCACTTGATCAAGATCAATACACTGCGGCACGTCCACATCCATGCGACTTTTGCAGCCGTCGATTTAGAAAGAAGGCGAATTTAATGAATCATATGGTGGCTCATCAGACAGATCGTCCACATGGGTGTAACCTGTGTGGTGTGCGTTACATACGAAAATGTGACCTCATGAACCATTTAAAGATTCATGCGTATGTCCCTGAAACGGATAACATCGAAGAAGAAATACACGAAGATTCCgattatgaaaaacaaaaaagagcTAAACCATTTATTAAGAAACTAAGAAAGAAGACTAAAGTTAAAGAGGAGTATCCAGATTCTTCAGATGGTAAAATCGCGTCGGGTTCAAGATCTTACGACTATGTTGACGAAGATATGCGATTAATGGAAGCCATGGAGAATAATGTAAAATCTGATTATTCAGATTACTTGCCTCAAGAAAACCATCCTATGGCTGAGCCGAGGTATCCTATTACTGATCCTAGAAAGCCGTTTGTTTGTCAGCACTGTGGTGTGGGATTTGCAAGAGAAAAGGCACTAGCTTCGCATGCGAGAGTGCATGCAGGTGATAGTCCGTTTGAATGCCAGAGGTGTGGTGAAATGTTCTGGGACGCTGCATTGATGCGAGAACATATGCGAATCAAACATGGTGACGTTGAAGATGATTACGAAGAGGATGACGATGAATATTCTGAAGAAGAGGGCAAATACGGAGAGTTCTTTTGTCAAACATGTGGAATGTCATTTCATAGACAAGATTTGTTGAAGCGCCATCAACGAATCCATGTGAAAGAAGAATACATAAATGAATCGGAATTTGGGCACGTGTGTAATGTGTGTGGGGAATCGTTTCAGGAAGCTCTTGATTTACTAGCACATGCCGAAGTACATGCTAGAGGGACAGAGCATAGATGTATGTTATGTGGGGAATTATGTACAGATGAACAATCTGTTGCAGTCCATGTGCAATCGAAGCATGGTAAGAATTTGCCCCCCAATACGTGTTTACAGTGTGGACGTACATGTAAAGATCGTCGAACTCTTTTGAAACACTCATTTGAGcatacaaaagaaaaagtttTTTCTTGCTCTAAATGCccaaaaacatttcataatagAGCAAGATTGAAAAGGCACATGTTGTCTCACAGAAGTAAAGTTGTTAGTTGCGATGCATGTGGGGAGGAGTTTCCCGACGGAAGATCTTTGATGAACCATAGGCACAGTCATAGTAGTGTATCAGGCAGGCAATTTCCTTGCAAAGAATGTGGTAAAACATTTGGGTCTCGTAGTTCACAACAGATACATTTAAGGATACATACTGGTGAACGACCTTACGGTTGCCGCTTTTGTTGGAAGGCATTCGCTGATGGTGGTACATTACGTAAACATGAACGAATTCATACTGGTGAGAAACCTTACGCATGTGCCGTATGTCCAAGAGCATTTAATCAACGTGTAGTATTAAGGGAACACATTCGTTCTCATCATTCTGGGCCCGACCCTAATTACAGTCATAGTATGACACCTTATTGTTGTTCTGTCTGTTCCGATATGTTTGCAACATCACAAGATTTAATTGTACATTTAATCCATCATTGTGACTTGAATACGGCAATGCGGCGGCAGCCGCAAGTGGGTCCTAGAAAATACAAAAGGAGGAGGAAGCTAAAACCGCATGAGCTTGAACTTATTTCAAACAACATGGATGATGATGACGAAGATGATGAGGACTATACTGATTCAgatgatgaaaatgaaagaaggaaaaaaaagaagaaacaaaacaaacctGTTAGCAAGCTAAATGTGTCTGGTTATGTTGATATGTACAATACCTTCTCATCACCTACTGAAAATATCGGTAGCCTCATCAAAACAAGTACTAaaccaaagaagaaaattaaagcgGAGCAAATAGTACCATCACGTCCGAAGATGATACACACGCAGAAAACAAAAGTAGCTGTGGAAACAACAGAAGGTGGAAAAATTCGACACAAAACAAAGACTTTAGTAACGAGAACACAACCTACAGAACTAAAGTCAGCAACAGGCGAACGTATCAGACCACGCACGAAAAATGTGAGTTATCATATTTTAAACCCTGAAAAATTGCCACTGGCAACATTTCCTGATGATGATACCATTGAGGCAGTTAATAATTTGTTAGCCAGTGATCCGCAGCATCAGCAGAGCAATGGTCTTGATCATGCAGAAAAGGTGATTCATAATAATTTCGAACAGATTGTCGAAGAtgataaaaccaaaattaaaagagcTAACAATAGTTTGGAGCCCGGTAGAATTATTATTGGGCCTGGAACAAAAGTTGTTAGATTAGTAAAAGGTGGCATGAttgttactaaaaataaaaagaaagaagaacCTGAACCAGAACCCGAACAAATAATTCCAGATATCGATGAACCGATGTTACATATAAAACAAGAGATAACTGATCCAAGCCCTCTCCATGAATTAGCTGAAATATCAATGCAGCATGCGCAGAAtctttttaaatgtgaaatgtgCAGTGAGGTATTTTCGGACCGTGCGCAGTTATTAGTTCATGTACCTATTCATATCTGA
- Protein Sequence
- MEEGFALAWEDAVSVGQEEEVICGIENETILSTHTNEFADVCEEVIVQDNSEHHAEGEISADNVMYITDDNVLIMQPAPQTPFINCHVTEEIVSEQWNESCPEIVVGSEEHVGETEEQADEDVVIPLPLDQDQYTAARPHPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYVPETDNIEEEIHEDSDYEKQKRAKPFIKKLRKKTKVKEEYPDSSDGKIASGSRSYDYVDEDMRLMEAMENNVKSDYSDYLPQENHPMAEPRYPITDPRKPFVCQHCGVGFAREKALASHARVHAGDSPFECQRCGEMFWDAALMREHMRIKHGDVEDDYEEDDDEYSEEEGKYGEFFCQTCGMSFHRQDLLKRHQRIHVKEEYINESEFGHVCNVCGESFQEALDLLAHAEVHARGTEHRCMLCGELCTDEQSVAVHVQSKHGKNLPPNTCLQCGRTCKDRRTLLKHSFEHTKEKVFSCSKCPKTFHNRARLKRHMLSHRSKVVSCDACGEEFPDGRSLMNHRHSHSSVSGRQFPCKECGKTFGSRSSQQIHLRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYSHSMTPYCCSVCSDMFATSQDLIVHLIHHCDLNTAMRRQPQVGPRKYKRRRKLKPHELELISNNMDDDDEDDEDYTDSDDENERRKKKKKQNKPVSKLNVSGYVDMYNTFSSPTENIGSLIKTSTKPKKKIKAEQIVPSRPKMIHTQKTKVAVETTEGGKIRHKTKTLVTRTQPTELKSATGERIRPRTKNVSYHILNPEKLPLATFPDDDTIEAVNNLLASDPQHQQSNGLDHAEKVIHNNFEQIVEDDKTKIKRANNSLEPGRIIIGPGTKVVRLVKGGMIVTKNKKKEEPEPEPEQIIPDIDEPMLHIKQEITDPSPLHELAEISMQHAQNLFKCEMCSEVFSDRAQLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990038;
- 90% Identity
- -
- 80% Identity
- -