Gspi031599.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390740.1:3939018-3940160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00093 0.066 14.7 0.6 1 23 10 32 10 32 0.97 2 12 0.0002 0.014 16.8 3.6 1 23 38 60 38 60 0.97 3 12 0.00093 0.066 14.7 2.3 1 21 66 86 66 88 0.95 4 12 9.8e-05 0.0069 17.8 4.5 1 23 94 116 94 116 0.97 5 12 2.9e-06 0.00021 22.6 0.9 1 23 122 144 122 144 0.97 6 12 5.2e-05 0.0036 18.7 0.4 1 23 150 172 150 172 0.99 7 12 1.2e-05 0.00088 20.6 2.7 1 21 178 198 178 200 0.95 8 12 0.00052 0.037 15.5 2.1 1 23 206 228 206 228 0.96 9 12 6.8e-07 4.8e-05 24.6 2.3 2 23 235 256 234 256 0.97 10 12 2.3e-05 0.0017 19.8 0.4 1 23 262 284 262 284 0.97 11 12 8.7e-06 0.00062 21.1 4.3 1 23 290 312 290 312 0.99 12 12 7.5 5.3e+02 2.4 0.4 12 23 320 331 319 331 0.91
Sequence Information
- Coding Sequence
- ATGACGCGTCACTCCaccgaaaaaaattacaaatgcgacaTCTGCAACGAACGTTTCAAATGGAAATCCAGTCTGGTATACCACGCCAAGGGCCACACGAATGAAAGAAaccacaaatgcgaaatttgcacaAAGACGTTCAAAATGCGTTACCAACTGGTGGACCACGTGAAATTTCACAACGCCGAGAGGAACTACTCTTGCGACGTTTGCGCCAAGAGTTTTAAAACGCGAGGGGGCGTGCGGCAGCACATGAAGTGCCACCTCACCGAGAAAAAccacaaatgcgacgtttgcgcCAAGTGCTTCAAAACGAAACAAGAGCTGACGAACCACGTCGAAAGTCACAccgacgaaagaaattacaaatgtgacatTTGCGCGAAGAGTTTCAAAAGGAAGGGCTACTTGGCGCAGCACATCTTGTTCCACAACGGCGAgagaaattacaagtgcgaagTTTGCGCGAGGAGCTCGAAAAGCAGAGGCGATCTGCTCAAGCACATGATTCGTCACAACGACGAGAGGAATTACAAGTGCGACGTCTGCGGCAAAAGCTTCAAGACGAGGATCGAAATGAGGAACCACATGTTGTGTCACTCGGAGGAAAAACGgcacaaatgcgacgtttgcggCAAGGGTTTTAAATTGCGCGGCGAAATGGTGCGGCACAAGAAATTTCACTCCATCGAGAGGAATCTCAAGTGCCACGTGTGCGGCAAGAGTTTCAAGACGAGAAGCGCCGTGTGGATGCACATGAAACGTCACACGGACGAAAAAAAGTTCATGTGCAATATCTGCGACAAGGGTTTTAAAACGAATAACGAAATGTTGATCCACGTGCAGAGCCACAGCGacgtgaaaaattacaaatgtgataTTTGCACCAAGAGGTTTAAAACGAAAAGCTATGTGTCGTACCACATGAAAAGGCACAGCGAGGTAAATTTCCAATGTAGTAAGAAAGATTTGACGAGCCACAAAAAGCGACACTGTGCGAAAATGTTTGAGGATAACGATGAAGAAGATTCTAAGCAAAAGTTATTAGTTAGAGAACGGAAACAAACAGTGGATGATAACATGAACATAAAAGAAGAATATTTGGAGATGGATAATGAAAGTGGTAaggatttcaaaatttaa
- Protein Sequence
- MTRHSTEKNYKCDICNERFKWKSSLVYHAKGHTNERNHKCEICTKTFKMRYQLVDHVKFHNAERNYSCDVCAKSFKTRGGVRQHMKCHLTEKNHKCDVCAKCFKTKQELTNHVESHTDERNYKCDICAKSFKRKGYLAQHILFHNGERNYKCEVCARSSKSRGDLLKHMIRHNDERNYKCDVCGKSFKTRIEMRNHMLCHSEEKRHKCDVCGKGFKLRGEMVRHKKFHSIERNLKCHVCGKSFKTRSAVWMHMKRHTDEKKFMCNICDKGFKTNNEMLIHVQSHSDVKNYKCDICTKRFKTKSYVSYHMKRHSEVNFQCSKKDLTSHKKRHCAKMFEDNDEEDSKQKLLVRERKQTVDDNMNIKEEYLEMDNESGKDFKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -