Gspi006403.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390732.1:14446333-14447995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.76 54 5.6 0.3 1 22 192 213 192 216 0.87 2 11 4.8e-07 3.4e-05 25.1 2.2 2 23 223 244 222 244 0.97 3 11 1.8e-05 0.0013 20.1 1.0 1 23 250 272 250 272 0.99 4 11 1.7e-05 0.0012 20.2 0.1 1 23 278 300 278 300 0.98 5 11 0.00025 0.017 16.5 0.2 1 23 306 328 306 328 0.97 6 11 0.055 3.9 9.1 0.2 2 23 347 369 346 369 0.94 7 11 0.0001 0.0074 17.7 0.1 3 23 376 396 375 396 0.99 8 11 5.6e-06 0.0004 21.7 2.9 1 23 402 424 402 424 0.98 9 11 0.00028 0.02 16.4 10.7 1 23 430 452 430 452 0.98 10 11 1.7e-05 0.0012 20.2 0.3 1 23 458 480 458 480 0.97 11 11 1.2e-05 0.00085 20.7 3.2 1 23 486 508 486 508 0.98
Sequence Information
- Coding Sequence
- atgggAGACGAAAAAGACGGAGGGTTCAGCAGCCCCAATTACAACATAAAAACGCCCAAACATCGTTATATAAAATTCGAACGTTTAAATAAAGTTTGCAGAGTTTGTCTATATGAAGAAGAAACGACTGATATATTTGATTTGCACTACGACGGCCACTACATATccgatttaatatatttttgttgttccgTTCAGGTTATAAAAAACGACAATTATCCCCAGAATATATGTGCGAAATGTATCTACGAATTGATTAATGTATTCGAATTTATTCAAAAGTGTTGCAACTCGAGTGAATATCTGCGGACTTTGGTTGATGGAAACAATGAAAACGTCAAACTCGAAGGATCGTTTGACCAGGATGAGTTAAAGAGTATAGTTGGCGATGATAACAGCCTCGAAGAAACCAGTTTGCCGGTGGCGACAAAGATGGACGAATATATCGATGATTGTGCGGCAAAAGTAGAAAGTGAATCGGATGACGAGTCTGATGCCCATGAATCAAATTCAGAAAAGCAAGAGATCAAAAATGAAGAGACATCACAAAAATGGGCTGTTAAACGACCACCTTATGCGTGCAATGATTGTGATCTACAATGGGACAGTTTCAAGGAGTTGAAGTCGCATCGAAAGTTGGCCAATCATTCTAAATCGACGAATAGTTATTGTTCAATATGCAAGAAGAGTTTTACTACTAAAGATGTGCTAAGACAACATATGAGGACGCATACTAAAGAAAAACCTTTCCAATGTGAATTGTGTTTCGCGAGTTTCAGTATAAGTCGAAATTTGAAGCGACACATTATGACTCATACAGGGGAAAGACCATTCATATGTGATACTTGTGGAAAAGGTTTTATTCAACAAGTGACTTTAATTGAGCACAAAAGGATACACACAGGAGAAAAACctttcatttgcaattattgtgGTAAAGCCATGAAAAGAGCAACCGAATTGAAGGGCCACATTGCAAGGCATGTGCTAGAGGAACAGGAAGACAGTCGCAAGTTGGATGAAAACAATGACCACATAGAATGCAACATATGCAAGAAGCTTGCCAATTCCAAACGTGCTTTAAGGATACACAAATCAGTGGCACATGGTAAAAAATCTCAATTGTGTAACATCTGCGGTAAAGGATTCGTCGGCAAACAAGGCCTCGTGTCACATTTGAAAACTCACTCCGGCGAAAAACCGTTTCCTTGCCCGCATTGTCAGAAAAGGTTTGCTCACAGGACGTCGTTGAAAGATCACATTTTGATTCACACCGGAGAAAAGCCGCACGTGTGCAAAACGTGCGATAAAGGTTTCATACAGCACCACCATTTGGTTCATCACATGCGCACTCACAGCGGCGAGAAGCCTTACATTTGTAGATTTTGTGGTAAAGCGTTTGCTTTGAAAGGCAACTTGACTGTTCATACAAGACTTCATACTGGTGAAACGCCTTTTGTTTGTTCCGTTTGTGACTGTGGATTCTACGATTCCAGTactttgaaaaaacatatgCGATTTCATGCGACTTGTGAACCAACTTCTGATTAA
- Protein Sequence
- MGDEKDGGFSSPNYNIKTPKHRYIKFERLNKVCRVCLYEEETTDIFDLHYDGHYISDLIYFCCSVQVIKNDNYPQNICAKCIYELINVFEFIQKCCNSSEYLRTLVDGNNENVKLEGSFDQDELKSIVGDDNSLEETSLPVATKMDEYIDDCAAKVESESDDESDAHESNSEKQEIKNEETSQKWAVKRPPYACNDCDLQWDSFKELKSHRKLANHSKSTNSYCSICKKSFTTKDVLRQHMRTHTKEKPFQCELCFASFSISRNLKRHIMTHTGERPFICDTCGKGFIQQVTLIEHKRIHTGEKPFICNYCGKAMKRATELKGHIARHVLEEQEDSRKLDENNDHIECNICKKLANSKRALRIHKSVAHGKKSQLCNICGKGFVGKQGLVSHLKTHSGEKPFPCPHCQKRFAHRTSLKDHILIHTGEKPHVCKTCDKGFIQHHHLVHHMRTHSGEKPYICRFCGKAFALKGNLTVHTRLHTGETPFVCSVCDCGFYDSSTLKKHMRFHATCEPTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -