Gspi029554.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- ZNF639
- Assembly
- GCA_959613385.1
- Location
- OY390739.1:15678780-15680949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 9.7 7.9 1.1 1 15 33 47 33 55 0.88 2 17 0.058 4.1 9.1 1.4 1 23 61 84 61 84 0.97 3 17 0.23 16 7.2 1.8 1 23 90 112 90 112 0.87 4 17 0.00024 0.017 16.6 3.6 1 23 118 141 118 141 0.96 5 17 0.0032 0.23 13.0 0.8 1 20 152 171 152 172 0.96 6 17 1e-05 0.00074 20.9 0.2 2 23 184 205 183 205 0.96 7 17 5.5 3.9e+02 2.8 0.0 3 23 316 336 314 336 0.92 8 17 0.0025 0.17 13.4 1.3 1 23 356 379 356 379 0.93 9 17 0.0019 0.14 13.7 1.3 1 20 384 403 384 407 0.90 10 17 1.5 1.1e+02 4.6 5.8 1 23 414 436 414 436 0.97 11 17 0.00013 0.0094 17.4 0.2 1 23 442 464 442 464 0.98 12 17 3.2e-05 0.0022 19.3 2.4 1 23 470 493 470 493 0.97 13 17 0.00029 0.021 16.3 3.8 2 23 505 526 505 526 0.97 14 17 3e-05 0.0021 19.4 1.8 3 23 534 554 533 554 0.98 15 17 0.00064 0.045 15.2 4.6 1 23 560 582 560 582 0.98 16 17 6.3e-06 0.00045 21.5 0.6 1 23 588 610 588 610 0.98 17 17 0.0025 0.18 13.3 0.0 1 21 616 636 616 637 0.96
Sequence Information
- Coding Sequence
- aTGGTAAGGAGCTGCTCAGTGCGTCTCGTGAAAAGCGAAATTGTGGCCAGACATGTTAAGAGAGCTCTGGACAACGAACTGAACGTACCAAATCCATTCACTTGCAACATTTGCGGCATACACTTCGAAAATCCCGCGCAGATTGCGTTTCATTGCAGTACCCATTCGGAATCGGGCCTCTACAAATGTCCCTTGTGCGAGTTCCAAACGCGGAATAAGTCGTCGATAAAGCCGCACATCAAGCGGCGCCACACCAAAGATTTCAAGCACACCTGTCCAATTTGCGGCAGGGGATTTTTAAGCGACTCCACTCATAACGAGCACATGAAGTTGCACGCCGGTTTGAAATCGTTCCAATGCGAACACTGCGATAAGAAGTTCACGTTGAAACGCTACTTGAGCATCCACGTGAAGTTGAATCACGCCGACATCGTGAACGGTTCAACTGAACTCTTCACTTGCAACGTTTGCTCGCGGAGTTTTAAGTTCGGAAAAAGTTTGGTGCGGCACCTGAGTTGCATGCATAACATCGGCGCAAGTAGGAAAGTTCCGTGTCCAATTTGCAAAAAGGTCATCaccaataattacaatttgaaaatacacATGAAATTTCACACCGGCGAAAAACCgtCTCACGAACCACTAATAACGATAACAGAATTTGACCGGTCGAAATTGCGATGGACTAAAACCCTACCCGAGCTGGAAATCATACCAGTTGGAAGCGATGGGAAACTAATGGACCAGCCGGCCGAAAATTCTAGCTCGAACGAAGACAAATCTGTTAAAGTTGTGCCAAAAATTAAGATCGTTGCGAAAACTGGCAGACGGAGACGACCCGCCTCCGGCTACGTCAACCCGTTTAATTACTCCAATTTAACAATGAAGAAGTTCCATCGAAAGAACAAGCACTTGGAGAACACGAACCTGAAGATGAAGTGGGCGTGCATGATTTGCAACGAAATTTCATTGGACAAAGAAAGCCTGATCGAACACTACGAAATCCATAAGCAAGAAAAGGAAGCTAGGGTGAAAGTGGAGAATGAGCAAGACGAcatcgaatattttaattgcgcAATTTGCGGACAAGAATTCACGTCGTTGAAGAGTTACGAGAAGCATTTCGACAAAAAACACGGTGAGCGCAAGTACACGTGTTTCGAATGCGGGAAGGTGTACAAAGACGCCCTGCAATTATGCATACACAATTTCTTGGTCCATCCGAGGgatgataaaaaatacaaatgcatcGTTTGTGACTTTTGCACGTCGACCAGGAAGAGCATAATGCACCACTTGCAGAAACACGAAGATTCGTACAAATATaaatgcgagatatgtggtAAGAGTTTCGAGATGGAGAACTGGTACGAAGAGCATAAGAACATTCACGGAAACATCGCGGCCTTTTCTTGCGACGTTTGCGGAAAAACGTTCCCGTACACTAGACACTTACTGGCGCACAAGAAAACCACCCACCCGGAGTTGTTCGGGAAAAATTCCGCCGTGAACGAGTGTCACCTTTGCAATAAGCGCTTCGCGCACAAAAAAAGTCTGATCTTGCACGTGCGTGGACACAGTGGTGAAAATTCGGTGTTGTGCGACATGTGCGGAAAACGACTATCAAGCAGTGAACACTTGAAACAACACTTGAGGATCCACACGGGTTACAAGCCGCATAAATGTTCGGTTTGTACCAAAGGGTTTGCCAAAAAGTGTAATCTCACTTTGCACGAGAGGGTGCACAGCGGAGAAAAACCGTACGTTTGCAAAGTCTGCTCGAAGGCGTTTTCACAACGATCCACCCTCGTGATTCACGAGAGATACCACAGTGGAGAAAGGCCGTACGTGTGCACGCTGTGCAATAAAGGTTTCGTTGCGAAAGGTTTGCTGAGCGTGCACATCAAAAACTGTACAGTTATCCCCGCGGAATATTTGTaa
- Protein Sequence
- MVRSCSVRLVKSEIVARHVKRALDNELNVPNPFTCNICGIHFENPAQIAFHCSTHSESGLYKCPLCEFQTRNKSSIKPHIKRRHTKDFKHTCPICGRGFLSDSTHNEHMKLHAGLKSFQCEHCDKKFTLKRYLSIHVKLNHADIVNGSTELFTCNVCSRSFKFGKSLVRHLSCMHNIGASRKVPCPICKKVITNNYNLKIHMKFHTGEKPSHEPLITITEFDRSKLRWTKTLPELEIIPVGSDGKLMDQPAENSSSNEDKSVKVVPKIKIVAKTGRRRRPASGYVNPFNYSNLTMKKFHRKNKHLENTNLKMKWACMICNEISLDKESLIEHYEIHKQEKEARVKVENEQDDIEYFNCAICGQEFTSLKSYEKHFDKKHGERKYTCFECGKVYKDALQLCIHNFLVHPRDDKKYKCIVCDFCTSTRKSIMHHLQKHEDSYKYKCEICGKSFEMENWYEEHKNIHGNIAAFSCDVCGKTFPYTRHLLAHKKTTHPELFGKNSAVNECHLCNKRFAHKKSLILHVRGHSGENSVLCDMCGKRLSSSEHLKQHLRIHTGYKPHKCSVCTKGFAKKCNLTLHERVHSGEKPYVCKVCSKAFSQRSTLVIHERYHSGERPYVCTLCNKGFVAKGLLSVHIKNCTVIPAEYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -