Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390732.1:7197833-7204860[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.016 1.2 10.8 2.5 3 23 180 201 179 201 0.96

2 20 0.8 56 5.5 0.5 1 19 337 355 337 358 0.90

3 20 0.84 59 5.4 2.9 1 23 442 465 442 465 0.89

4 20 2e-07 1.4e-05 26.2 1.3 2 23 530 551 529 551 0.97

5 20 7.1e-06 0.0005 21.4 1.1 2 23 567 588 566 588 0.97

6 20 0.037 2.6 9.7 0.1 2 23 596 618 595 618 0.93

7 20 0.0038 0.27 12.8 0.1 2 23 623 644 623 644 0.96

8 20 0.0018 0.13 13.8 0.4 1 23 666 688 666 688 0.97

9 20 0.13 8.9 8.0 4.5 1 23 714 736 714 737 0.95

10 20 0.0027 0.19 13.2 1.0 1 23 747 769 747 769 0.98

11 20 1.8e-05 0.0012 20.1 8.9 1 23 795 817 795 817 0.98

12 20 3.1 2.2e+02 3.7 2.7 3 23 839 859 837 859 0.96

13 20 0.00071 0.05 15.1 1.1 1 23 882 904 882 904 0.95

14 20 0.53 38 6.0 0.1 2 23 918 940 917 940 0.94

15 20 0.00044 0.031 15.8 0.9 1 23 956 978 956 978 0.94

16 20 2.5 1.7e+02 4.0 0.2 1 23 1010 1033 1010 1033 0.93

17 20 0.0066 0.47 12.0 0.8 2 23 1044 1065 1044 1065 0.97

18 20 8.5e-06 0.0006 21.1 0.6 1 23 1074 1097 1074 1097 0.97

19 20 8.1e-05 0.0058 18.1 3.7 1 23 1105 1127 1105 1127 0.98

20 20 0.00054 0.038 15.5 0.3 1 23 1146 1169 1146 1169 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.016	1.2	10.8	2.5	3	23	180	201	179	201	0.96
2	20	0.8	56	5.5	0.5	1	19	337	355	337	358	0.90
3	20	0.84	59	5.4	2.9	1	23	442	465	442	465	0.89
4	20	2e-07	1.4e-05	26.2	1.3	2	23	530	551	529	551	0.97
5	20	7.1e-06	0.0005	21.4	1.1	2	23	567	588	566	588	0.97
6	20	0.037	2.6	9.7	0.1	2	23	596	618	595	618	0.93
7	20	0.0038	0.27	12.8	0.1	2	23	623	644	623	644	0.96
8	20	0.0018	0.13	13.8	0.4	1	23	666	688	666	688	0.97
9	20	0.13	8.9	8.0	4.5	1	23	714	736	714	737	0.95
10	20	0.0027	0.19	13.2	1.0	1	23	747	769	747	769	0.98
11	20	1.8e-05	0.0012	20.1	8.9	1	23	795	817	795	817	0.98
12	20	3.1	2.2e+02	3.7	2.7	3	23	839	859	837	859	0.96
13	20	0.00071	0.05	15.1	1.1	1	23	882	904	882	904	0.95
14	20	0.53	38	6.0	0.1	2	23	918	940	917	940	0.94
15	20	0.00044	0.031	15.8	0.9	1	23	956	978	956	978	0.94
16	20	2.5	1.7e+02	4.0	0.2	1	23	1010	1033	1010	1033	0.93
17	20	0.0066	0.47	12.0	0.8	2	23	1044	1065	1044	1065	0.97
18	20	8.5e-06	0.0006	21.1	0.6	1	23	1074	1097	1074	1097	0.97
19	20	8.1e-05	0.0058	18.1	3.7	1	23	1105	1127	1105	1127	0.98
20	20	0.00054	0.038	15.5	0.3	1	23	1146	1169	1146	1169	0.95

Sequence Information

Coding Sequence: ATGGCAGAAGGAAGATTGGGAAATTACAGTTCTTGCTGCCGATTGTGCCTGTCGGACAAGTACAGCATTCTGAAGCCAATGTTTGAAGACGACGCGGATAATCGCactttggttcagaggatttaCAATTTGCTCGGCGTCGAGGTATCATCGAGTGACAAGGTATCTACAATGATATGCGACCAGTGCCAGGGCAAAGTGAATGGGTGGCATGATTTTAAGAAGGAATGCTCGGACAACCAGGCCAAGCTGCAAGAATGGCTGGCCGATGGCCAGGACGAAGCAAACTTGAGCGTGCAAGTCAAGGACGAACCGGTCGACTGCGAGGAAAGCCAAAGATCGGAAAACGCCGACGAACCGCAGTCCGTCGTTATTAAGTCCGAGCCCAACATCGAAGATTATTACGATCTTCCGGCGTCTTTGCACGAGCCGGACATCACTCTTCAGGAGCAGGACTGCGAGGAAGGCTTCAATGCGAGCTTTAATGATGGCCTGAATGGGACTATGGAAATGGGGAAGAGAAAAGACAGTAAGCATTGttctttttgtaataaaatgtttagtaCAGTTGGCAATCGCATGAAGCATGAAAGAATTATTCATAGCAATCGAAGAAAATTTACCAATCAACTTTTGCTAAGTGCAGTGACAACGAGTCAAGACGACTCATCGCAACAATCAATGGATTCCGCAGTTAGTAGTTCAGCTCACACTGAAGCCTCGGTGGCGCAGTTCGATTCCGAAAACGACCATTCCGAAAACACCGAAAGCGACATTCAAAAGATACAGTTCGCAGCCGGCCTGCGCCTCAAACAGAAGTCGACGACGACCGCGTCGAATCAGTTCATCGACGGTCCGCTCACTAAGATGGAGCTGGCCTATCTGGACAGGAGCAAGGCGATGGTCGCCATGTTGTTCGCCTTCAAGTGCGCGTGTCACAACGTCGCCTTCCCCACCATCAAGCGACTCTTCGCGCACCTGCGCATGAGCTACACCTGGTTCCCCATCTTCACCTGTTACAACTGCGTAATAACGTTTTCAAACCGCTCGCTGAGCATGCGCCACACCGGCAAGTGCTCCAAACAATACCTCGAGAACATCGTTAAGTTATCCGAGCTGTGCAAGCGCATGGATACCAAGGTACGCATCTACCAGTACTGCAAGTGCATGAAGTGCGAAAACTTGTACGCGTTCTACGAGGATTATTGCGACCACATCGACAAGGAGCACATGAGCGAGGGGCCGTACATATGCCTTTGTTCGAAGGAATTTGGGAGCGTGGAGGAATTCAAGGCTCATTTGTACAACGGCTGCTATTTGAACTATTATTGCGATATTTGTTACAACTCCTTCGAGTCGCTGAACGATTTCCGAACGCATTGTGAAACCGAACACGACCACGTGGACGATTTCAGTTTCCTGGAGCTGCATCCTGCTTTCGAACTGGTGAGTCCAGACGAAGTTGCGGCCGTTAGCAACAAACGCTCGTACGACGAAATAGAATCTCCCGACATAAAAACCAGTGCCGTCGAAATCGAGCAGGCCAGGAAAAAAATGATGCGGAGCAGAGGCTTCAGCGAGCCGCTGGAGTGTGAGATGTGCGATCGACGATTCACCAATCCGTTCAATTTGAAGAAGCACATGCGGAGCCACCGCAAGAGCCACGGCGTGGGCAACGGCTGGAAGAACTGCCCGTCGAGCTGCGACAAGTGCGGCAAGGTCTTTTCGACGTATTACAACATGCTGCGCCATTACAAAGTCCACGATGAATCCGAGAGGAATCTGCAATGCGCTCTTTGTACCGAACGATTCCGATTGGTGTCGCAGTTGAAGGACCACTTGATTTTGGTTCACGGACGCGCTAACGTGTGTCAAGAGTGCGGAAAGCAGTTCGAGTCCGTTGAGGAGCTGGATCAGCATAGAAGCGTGCATTTGAACATCAAGGTGTACAGGGATTCGAAAACGCATTCGTATCGCACGGGTTCCAAACCCAAGCACAACTGCGAGATTTGCGAAAGCAGCTTCGAAACGGAAGATGAGTTATCCGAACATGTTCGAATGCACGATACCATGCCGGTCTTGGACATAGAGAACGGCCCGGAAAACGTCGAAGTGGAGGAAAAGAAAGTATTCGGGAAATATTCGTGTTACGAATGCGACCGCCATTACGTCAGTTATAAGGGACTGTGGTTGCACAACAAACGTCACCACCCGAATAGGAAACCGGCACCGCAAAATTTCCAATGCAAATATTGCGATCGCGTCTTGCAAACCAACGCTGCTTATCAGATGCACAAGCAAATGCACGAGCGCATGTTGCGGCAATCGTCGGGAGCTGTCGTGCCGACAGTGAAACGCCGCGAAGAAGAAGACGACGATTACCACACCTGCAAGCATTGCTTCAAGGTGTTTTCCacgaaatacaatttaaaaacgcACTTGAAAACACACGGAATTTACGTATCACCTGGTCGAACGTACTCCAAAACAGGCAAGTTCGTCAAAACCTTCTGGTGCGACACCTGCCACCAGGCCTGCCAAGGCTACGCCGAATTGCAAAAACACAAACAAGAACACGTACAGGAACGCATGCAGGAAACTCAGAACCCGGAGGAAGAACCCATCGAAATGAAACCGCAGATTTTCCTATGCGACATATGCACGAAAGGTTTCACCTCCAAGCTAGCACTGAACAAACACAAAGAAAAGCACGATGAAGAAAACACCGGGCCCCAAAAACGCGCGTtcgtttattgcaaatattgcaaGGTTCCGTACTTGAACGTCGAATCGTTGAACACCCACATGCAAGCCGAGCACGACGAGGTGCTCAAAATCCAGAAACCGAAGGTTCCGActaaaaaattcatttgcaacaTCTGCAGGAAGATGTTCGACACGTCCGGCGCGTTGTGTTCGCATCAAGGTTGGCACAAACGAGGCAAGGCCGAGAAAGTCCTAAAAAATCATTACTACGCGAAACCGATCAAGGAGGTTCCGCGACCGCGTTTGTTACCCATTTCGAAACACGAATGCACGTCTTGCTCTTTGGTGTTTTTGACGGACACCGCTCTGCAAATTCACATATTGGAGGCGCATCGAAATATAAACGCCACGGTTATGCCGCCGCGTTGCACTTTGTGTAATTTGGAGTTCACTTCTCAAGAGGAGTACGAAAGCCACTCGCGATTGCACAGGGTGACCGACAGCCAGAAGGCGTATCCGTGCAAGTACTGCAGCAAGGGTTTCAGCAGGAGCGACGTCTTGAACGCCCACATCCGGCAGTTCCACAATGAGCATCTGCAGACGTCGTTCAGGTGTCACCATTGCGACCGCATCTTCGAGAAGCAGAACGCTCTGACCATACACTTGAAGGTGCACGAGAGACAGAAACTGACGGGCGTGCCGATGAAGCAGCCGCCGAGCGGACACCGCTACAAATGTTCCATTTGCCACGTAGGATTCGATGTACCCAAAGATCTTAAGAATCACATCATTCTCTCTCATCCGTTTTAA
Protein Sequence: MAEGRLGNYSSCCRLCLSDKYSILKPMFEDDADNRTLVQRIYNLLGVEVSSSDKVSTMICDQCQGKVNGWHDFKKECSDNQAKLQEWLADGQDEANLSVQVKDEPVDCEESQRSENADEPQSVVIKSEPNIEDYYDLPASLHEPDITLQEQDCEEGFNASFNDGLNGTMEMGKRKDSKHCSFCNKMFSTVGNRMKHERIIHSNRRKFTNQLLLSAVTTSQDDSSQQSMDSAVSSSAHTEASVAQFDSENDHSENTESDIQKIQFAAGLRLKQKSTTTASNQFIDGPLTKMELAYLDRSKAMVAMLFAFKCACHNVAFPTIKRLFAHLRMSYTWFPIFTCYNCVITFSNRSLSMRHTGKCSKQYLENIVKLSELCKRMDTKVRIYQYCKCMKCENLYAFYEDYCDHIDKEHMSEGPYICLCSKEFGSVEEFKAHLYNGCYLNYYCDICYNSFESLNDFRTHCETEHDHVDDFSFLELHPAFELVSPDEVAAVSNKRSYDEIESPDIKTSAVEIEQARKKMMRSRGFSEPLECEMCDRRFTNPFNLKKHMRSHRKSHGVGNGWKNCPSSCDKCGKVFSTYYNMLRHYKVHDESERNLQCALCTERFRLVSQLKDHLILVHGRANVCQECGKQFESVEELDQHRSVHLNIKVYRDSKTHSYRTGSKPKHNCEICESSFETEDELSEHVRMHDTMPVLDIENGPENVEVEEKKVFGKYSCYECDRHYVSYKGLWLHNKRHHPNRKPAPQNFQCKYCDRVLQTNAAYQMHKQMHERMLRQSSGAVVPTVKRREEEDDDYHTCKHCFKVFSTKYNLKTHLKTHGIYVSPGRTYSKTGKFVKTFWCDTCHQACQGYAELQKHKQEHVQERMQETQNPEEEPIEMKPQIFLCDICTKGFTSKLALNKHKEKHDEENTGPQKRAFVYCKYCKVPYLNVESLNTHMQAEHDEVLKIQKPKVPTKKFICNICRKMFDTSGALCSHQGWHKRGKAEKVLKNHYYAKPIKEVPRPRLLPISKHECTSCSLVFLTDTALQIHILEAHRNINATVMPPRCTLCNLEFTSQEEYESHSRLHRVTDSQKAYPCKYCSKGFSRSDVLNAHIRQFHNEHLQTSFRCHHCDRIFEKQNALTIHLKVHERQKLTGVPMKQPPSGHRYKCSICHVGFDVPKDLKNHIILSHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -