Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:20649016-20653689[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.11 7.9 8.2 2.6 1 23 179 201 179 201 0.93

2 14 0.0036 0.25 12.9 1.7 1 23 207 229 207 229 0.98

3 14 3.8e-05 0.0027 19.1 3.4 1 23 235 257 235 257 0.98

4 14 0.06 4.2 9.0 7.0 1 23 263 285 263 285 0.97

5 14 2.1e-05 0.0015 19.9 3.4 1 23 291 314 291 314 0.95

6 14 0.00054 0.038 15.5 2.4 1 23 320 342 320 342 0.98

7 14 2.2e-05 0.0015 19.9 2.9 1 23 348 370 348 370 0.98

8 14 0.0026 0.19 13.3 1.3 1 23 376 398 376 398 0.96

9 14 5.6e-06 0.0004 21.7 3.0 1 23 404 426 404 426 0.98

10 14 5.1e-05 0.0036 18.7 2.0 1 23 433 455 433 455 0.97

11 14 0.0056 0.39 12.3 9.0 1 23 461 483 461 483 0.99

12 14 0.00024 0.017 16.6 0.3 1 23 489 511 489 511 0.98

13 14 6.2e-05 0.0044 18.4 1.0 1 23 517 539 517 539 0.97

14 14 4.8e-07 3.4e-05 25.1 1.5 1 23 546 568 546 568 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.11	7.9	8.2	2.6	1	23	179	201	179	201	0.93
2	14	0.0036	0.25	12.9	1.7	1	23	207	229	207	229	0.98
3	14	3.8e-05	0.0027	19.1	3.4	1	23	235	257	235	257	0.98
4	14	0.06	4.2	9.0	7.0	1	23	263	285	263	285	0.97
5	14	2.1e-05	0.0015	19.9	3.4	1	23	291	314	291	314	0.95
6	14	0.00054	0.038	15.5	2.4	1	23	320	342	320	342	0.98
7	14	2.2e-05	0.0015	19.9	2.9	1	23	348	370	348	370	0.98
8	14	0.0026	0.19	13.3	1.3	1	23	376	398	376	398	0.96
9	14	5.6e-06	0.0004	21.7	3.0	1	23	404	426	404	426	0.98
10	14	5.1e-05	0.0036	18.7	2.0	1	23	433	455	433	455	0.97
11	14	0.0056	0.39	12.3	9.0	1	23	461	483	461	483	0.99
12	14	0.00024	0.017	16.6	0.3	1	23	489	511	489	511	0.98
13	14	6.2e-05	0.0044	18.4	1.0	1	23	517	539	517	539	0.97
14	14	4.8e-07	3.4e-05	25.1	1.5	1	23	546	568	546	568	0.99

Sequence Information

Coding Sequence: ATGGCAGAAAGTGAGGAAGgattacaaaacaatataaatgtatgGAATGAAACTCTGAAGAAACCAATCCTAACCTACGGGAGCGAGACATGGGTAGCAAACAGGAACTTGCAGAGTAAAATCCAGGCAAGCTTAATGAAGTACCTAAGAGGAGTTAAAGGAATAACAAAAAGAGAGAGAATTAGGAATGAAGTGACCAGGAAAGAACTGAAGACGGAGTCCACTCTAGAATACATAGAAGAAAAGCAACTGGGTTGGCGAGCCCACTTACATCGAATGGAAGACAACAGACTAGTGAAAAAAGTATGGAAAGCCAGGGACATTGCAATGGACGAAAATGTCTTAACTGTCGTCAGACCAGACCGAACGAAGCTCTTAAGTTTAGCACAAACGCTCATACGCGAACTAGAATCCTACGAGTATCCTATTATAGTGAAGAAAGAAGGTGATAAAGAAGTACTTACCATCAATGCAAACAAGTGCATTAAACAAGACGTAGATGaagaaataaaaccaaatatatCCCCCACATTACATGAATGCAATCTTTGCTCCAAGCGTTTCAAGACCGCGCTAATAAAATCACGCCATATGATGATGCACGGTGCCGAAAAAATCTACAATTGTGCAATCTGCCCTAGTCGCTTCAAAACCAAGAGCCTCCGCCTTCAACATACCAAGACGCACACCGccgaaagaaatcacaaatgcgaGACCTGTTCAAAGAGCTTCAAGAGTAGACGAAACCTGCTCGAGCACGTTGAAACCCACGCCGCAGACCGAACCCACCAGTGCGAGTTCTGCCCGAAGCGCTTCAAGACACGTGGCAGCTGTATGCGGCACTCGAAGATGCACAATGCCGAGCGAAAACACGCCTGCGAGATCTGCCCCAAGCGCTTTAAAAAACCCCTGCACTTGACGCAGCACATGCGCAACACGCACTCCAACGAAAGAAACCACAAATGTCCAACGTGCGCGAAGAGTTTCAAGACGAAAATGACGATGCTGCAGCACGTCCAGATACACAACGATGCGGCGACGCACAAGTGCGACTTATGCGACAAGCTCTTCAAGACACGCGTGTACTTGCTGGTTCATATGAAGACGCACACGAACGAGCGGAAGCACCAGTGTGACGTCTGCGCCAAGCTCTTCAAATCGAAGGTACAGCTGTCGAACCACCGGGAAGCACACACCGACGAAAGAAATTACGTGTGCGAGAAATGCGGCAAGCGCTTCAAGTCCAAGCGGCACGTTTTTTCCCACATGATCGTGCACAAGCCCGTCGAGGGGGTCCACACGTGCGGCGTGTGTTCGAAAACATTCACCAAGCGGCAAAATTTGCTGGTGCATGTGAAGATACACAccgacgaaagaaattacaaatgcgagtTTTGCACGAAGAGCTTTAAGACGAGGAAGTGTCTTTCATACCACAAGAAAAGGCACGATGTTACTAGTAATTACGAGTGTCGTATTTGCTGGGAAAATTTCGACACGAAAGAAAATTTGGTGGAACACTCGAAGATGCACGTCGATGAAAAAAGTCACCGATGCAAAATCTGTTCGGCAGTTTTTAAGACGAGCGAGAATCTACTGCTGCACGTGGACACACACACTGGCGAGCGGCTTTGCTAcagatgtgaaatttgcaacaaggGTTTCAAAACGAAAACATGGATGCAACGTCACATGGAAACCCATACAATTCAACGATCTATTAACGAATTTTATCTGATTATTAAAGAAGAAAGATGTGGTAAGcattag
Protein Sequence: MAESEEGLQNNINVWNETLKKPILTYGSETWVANRNLQSKIQASLMKYLRGVKGITKRERIRNEVTRKELKTESTLEYIEEKQLGWRAHLHRMEDNRLVKKVWKARDIAMDENVLTVVRPDRTKLLSLAQTLIRELESYEYPIIVKKEGDKEVLTINANKCIKQDVDEEIKPNISPTLHECNLCSKRFKTALIKSRHMMMHGAEKIYNCAICPSRFKTKSLRLQHTKTHTAERNHKCETCSKSFKSRRNLLEHVETHAADRTHQCEFCPKRFKTRGSCMRHSKMHNAERKHACEICPKRFKKPLHLTQHMRNTHSNERNHKCPTCAKSFKTKMTMLQHVQIHNDAATHKCDLCDKLFKTRVYLLVHMKTHTNERKHQCDVCAKLFKSKVQLSNHREAHTDERNYVCEKCGKRFKSKRHVFSHMIVHKPVEGVHTCGVCSKTFTKRQNLLVHVKIHTDERNYKCEFCTKSFKTRKCLSYHKKRHDVTSNYECRICWENFDTKENLVEHSKMHVDEKSHRCKICSAVFKTSENLLLHVDTHTGERLCYRCEICNKGFKTKTWMQRHMETHTIQRSINEFYLIIKEERCGKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -