Gspi014779.2
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- ZNF131
- Assembly
- GCA_959613385.1
- Location
- OY390734.1:40770846-40774714[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1e-05 0.0015 19.9 4.8 1 23 166 188 166 188 0.99 2 13 8.6e-06 0.00061 21.1 1.7 2 23 193 214 192 214 0.96 3 13 2.2e-05 0.0015 19.8 0.4 2 23 217 239 216 239 0.93 4 13 0.00044 0.031 15.7 1.3 1 23 248 271 248 271 0.94 5 13 0.00015 0.01 17.3 0.6 3 23 302 323 300 323 0.93 6 13 0.0084 0.6 11.7 2.3 1 23 332 354 332 354 0.97 7 13 0.0074 0.53 11.9 0.2 1 23 363 385 363 385 0.96 8 13 0.013 0.9 11.1 2.8 2 23 389 409 388 409 0.97 9 13 7.8e-06 0.00055 21.3 3.3 1 23 415 438 415 438 0.97 10 13 0.00052 0.037 15.5 1.0 1 23 444 466 444 466 0.97 11 13 0.00026 0.018 16.5 0.9 1 23 474 496 474 496 0.96 12 13 1.5e-06 0.0001 23.6 1.4 1 23 502 524 502 524 0.97 13 13 5.1e-06 0.00036 21.8 1.8 1 23 530 552 530 552 0.99
Sequence Information
- Coding Sequence
- ATGAGCTCCTATTGTCGTCTGTGTCTGGAAGCAACAGTAAAGTTCGAATTAATAGATGATGTAAACGCCGTAACAAACagacaaaaaatcgaaaatttcctACCTGAAATGACAATCGACACCGTAGACTTTTGTGTATTGTGCCCAAATTGTGCAAAGACTCTTCAAGATATGTACAAATTCAAATCGAAATGTTTGGAAACTGATGAAATAATCACGAACTACATCCAAAACAACAGCATCGACGGACAAGTGAGTTTAAAAAACGTGATTGatagtttaaatgaaaatatgtacgAAAATGGCTTTGAGTTAGTGCAATGTCATAACACTGACGATGGGAAAGAAGGCAATGAGAAAGACTCGACTGTTCTGGATAACAGAAACATGGACGTGGTTGAGGTCAAAAAAGAAACGAATGAAACGTTTTCTGAAGTTGAAATAAAACTGGAAACTTGTGAAGAAACTGACTTAAAAATGGATGTTCAAAGCAGCTACAAATGTCACGCGTGTAAAGAAATTTTTTCTAGGTTGTCAACGTTCCAAAAGCACATGAAGACTCACGTGACGGGTTTAACATGTAGCACGTGTGGCAAGATATTTAAGTCTCAGTATCAATATAAGAAGCATGTGTTGTCGCATAAAACCAAGTGCATGATATGTGAGAAGGTGTTCGCCCGTCAATACCAACTAAAGACGCATTTAGAGGAAATACATGGTTGTATGTACGAATTGGGGCGATACAAATGCACGCAATGTGAAGCCATTTTTTATACGCAATCTGCACTTTGCAAACACGAAGCAGTGACGCATTTCTCAAAAGATGAAGGAAAAGCTGATAATTGTAACGCATTCAATTCAGCATATCGCCCGGATAGGCATCCGAAAACCCGCAAACTAGATTGCAAAATTTGTGGGAAGCTGTTCTCTGGTCTCTCTCATCTTACAAGTCACTTAGTGAGAGTACATGGTTGCACGGAAAGAACTAAGAAACACAAATGTGAACATTGTGAAGCTACTTTTTATACGGAGATTGAATTAGATAAACATGCTAAACTACATtccaaaacaaaaactgaagaAGGTTACATTTGTGATATCTGCAAAGCAGTGCTGTCAAGCACGAGGGAATTGAAGAAACATGGACAACTGCACATAAACGTCGAGTGCAGCTACTGCCACATGACTATGAGAAAAAGCTCGTTGAAGGATCATCTTAGAACACACACTGGTGAGAGGCCCTTCAAGTGCGAAAAGTGCGGTAAGGGATTCACACAGAGTGGAACTTTATACACACATCTCCGTCACACACACAACTCGTTGAAGCGATTCATATGCGACATCTGCCAGATGAAGTTCAAATTTGCAGTGTCGTTCCGGCTGCACATGGAGAAGCACAGTGGCAAGGTCGATAAACCTCACATCTGTGAAGTGTGCGGGAAGGCATTCCGGGTCGCGTTCGCAATGAAGAAGCACAAGTTGCGTCATACAAACGAGAAAAATCACACATGCTTCATCTGCGGGAAGGGTTTCGTCGACTCGAGTGGGCTCAAGCGTCACACGAAAATCCACACGGGTGAGAAACCCTATCAGTGCAACTTATGCGAATACAGAAGCAACCGACAGTCAAATTTACGAGTGCATATGAAATCTCACCTTAGGAAGATCAAAATCGAATGA
- Protein Sequence
- MSSYCRLCLEATVKFELIDDVNAVTNRQKIENFLPEMTIDTVDFCVLCPNCAKTLQDMYKFKSKCLETDEIITNYIQNNSIDGQVSLKNVIDSLNENMYENGFELVQCHNTDDGKEGNEKDSTVLDNRNMDVVEVKKETNETFSEVEIKLETCEETDLKMDVQSSYKCHACKEIFSRLSTFQKHMKTHVTGLTCSTCGKIFKSQYQYKKHVLSHKTKCMICEKVFARQYQLKTHLEEIHGCMYELGRYKCTQCEAIFYTQSALCKHEAVTHFSKDEGKADNCNAFNSAYRPDRHPKTRKLDCKICGKLFSGLSHLTSHLVRVHGCTERTKKHKCEHCEATFYTEIELDKHAKLHSKTKTEEGYICDICKAVLSSTRELKKHGQLHINVECSYCHMTMRKSSLKDHLRTHTGERPFKCEKCGKGFTQSGTLYTHLRHTHNSLKRFICDICQMKFKFAVSFRLHMEKHSGKVDKPHICEVCGKAFRVAFAMKKHKLRHTNEKNHTCFICGKGFVDSSGLKRHTKIHTGEKPYQCNLCEYRSNRQSNLRVHMKSHLRKIKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -