Gspi028824.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390739.1:6340062-6358254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.8e-05 0.0034 18.8 1.9 1 23 35 57 35 57 0.97 2 17 0.0011 0.081 14.4 7.5 1 23 75 97 75 97 0.98 3 17 0.0079 0.56 11.8 6.9 1 23 103 125 103 125 0.98 4 17 0.002 0.14 13.7 2.3 1 23 131 154 131 154 0.98 5 17 8.2e-05 0.0058 18.0 1.1 1 23 160 182 160 182 0.95 6 17 0.00014 0.0097 17.3 5.3 1 23 206 228 206 228 0.98 7 17 7.3e-05 0.0051 18.2 0.7 1 23 234 257 234 257 0.96 8 17 1.6e-05 0.0011 20.3 5.2 1 23 263 285 263 285 0.99 9 17 0.099 7 8.3 9.4 2 20 386 404 385 407 0.95 10 17 0.00073 0.052 15.1 4.1 1 23 413 435 413 435 0.98 11 17 0.00031 0.022 16.2 2.4 1 23 439 461 439 461 0.96 12 17 0.28 19 6.9 4.0 1 23 467 489 467 489 0.98 13 17 4.8e-05 0.0034 18.8 3.9 1 23 672 694 672 694 0.97 14 17 0.0074 0.52 11.9 3.2 1 21 699 719 699 721 0.93 15 17 0.00039 0.027 15.9 6.9 1 21 727 747 727 749 0.95 16 17 0.00063 0.045 15.2 7.6 1 21 755 775 755 777 0.95 17 17 0.00015 0.01 17.2 2.5 1 23 782 804 782 804 0.98
Sequence Information
- Coding Sequence
- ATGGAGACTCAATTCTCGAGCATCAATTACAGTACGCTAACAAACGACACCttcgaaaaaatattcctacaaTCTTTACAACCGCAGGTCaatggaaattattataaatgtgaattttGCGACAAGGACTTCGCAACCCCAACTGACCTGAAAACACACCACCTACTGCACACCGACGAGCTATTGCACACCGACGAGCTACTGCACACCGACGAGAGAAGACACCAGTGCGATTTTTGCACAAAAACGTTCAAGACTAGAAAGTACATGAAAGTGCACCGGAAAACGCACACTAACGAACAAAtccacaaatgcaaaatttgctcGAAATGCTTCAGTTTCCGCATCGTTATGCTAAGGCACATGAAAAGCCACGCCGCTGAGAGAAATTACCAGTGCGACCTTTGTACCAAACGTTTCAAGACCAAGGGCGGCGTCACGTTTCACATGAAGACGACACACAACAACGAGAGGAAATACAAGTGTGAGGTTTGCCTGAAACGTTTCAAAACTAAGCAAAATCTCCAGTTGCACGCGGAATtgcacggggcgaacgacgaaggcAGCGTTCACGATGGAAAATTGAGCCGCGCGAAAACGCACAATGAACGAAACCACAAGTGCGAGATTTGCAACAAACGCTACAAAACGAGGCGGTATCTGCTGAATCACATGACTAGGCACACCaccgaaaaaaatttcatatgtgATATTTGCGATAAAAGTTTCAAGACGAAGGAAGACATAGGGACCCATCTGAAGAAGACTCACTGCagggaaagaaattacaaatgtgatatttgcaccaaatgtttcaaaacaaaacaaagtgtGACGGTACATATGAAAAGACATGTCAGAAGAGGCACTAAGACAATACTCGATGTGGAAGGGCAGGTAGCCGACAAATtagaaatgcaattaattacagAGGAATGTAATATAAAGAACAAAGAATTGGAGATCGACGTTGACCATGATAACATGGAAAACACtgcaatgaatgaaatatttcttgAAGTGAAGCCAGAactaactgaaattttaaacatgacCGAATCTGACTACACATCTCAACATCCAAATGTCATTAGTAATAATCTCGAAATGGAATTTAAAAGTGAACTGTCTCCCCCAAACGACGAACGAAATCAAAAGTGCCATAACTGCGAGCAGTGTTTCAAGACCAAAAAAACGCTATTGCAACACATGACGTGCCACAGTAATGAAAGAAATCACAAGTGCAATATTTGCACGCAGGGTTTTAAAAGAAGGTACAGCATAATGCTGCACATGAAGCGTCATGGGAAGAATCACATATGCAATGTTTGTGTCGCATCATTCATAAGTAGACACAACTTGATGAAACATATGGAACGGCACACTGACGGAAGGAATCACAAGTGCGTTTTATGTGCCAAACTGTTTAAAAGGGAATGTGAGTTGTATACTCACGTGAAAATTCACTGTGCCAAGAAATGTAGAGACGTGACGGAAGAGGAAAAAGTCATTGTGTCCAACTCCTTAATGAACTCACACGTCGCAAAACCTGGCCTCGTTGAAGTTAACCCAGATAGTTCGAACGTAGACATTGAGGATTTTCTGAGCAAATCTGTTATCGAAAaGAAGAAAAACAACTCATATGTGAATGAAAATGACTTATATCCTGAAGTGAAGATAGAaccaacagaaattttaaaGATGTCACTGACAGATTCCACGTCTTTTCCATGGCCAAGTATCGTTGGTGACAATTTAATGATTGAATGCAAAAATGAATGCTCGCTTCCTGAAATCGTAGAATCTGGTCAACGAAAGCAAACTTTCGTCACAAAACTTGATGATATTTTCCAGACAAGTAATACGAATTGTACTCCTATTTCATTGGGTAATTTAATGAGTAAAACTATATCATCATTGCAAGACATCGTAAATTGCGTTTCGCAGGATTCATCTAGTAGTAGTAATAAAGTTGAAGACTCCAGTAAAAATAAAGCCGTCGAAATACGCAACCATACATGCGATATTTGTGAAAAAAGTTTTAAAGCGAAATATCTTTTATGTCGTCACATGGAGATTCACTCCGAAAGAAAGTACAAATGCGATATCTGCACCAAGAGTTTTAAAACGAGAAACATATTGGTGAACCACATAAAATGCCACAGCAATGTAAAGAACCACAAATGCGGTATTTGTTCTAAGAGTTTTAGGAGAAATAGCACTATGAGGAAACATATGAAATGCCACACCAATGAAAGAAACCACAAGTGCAATGTTTGCAGTAAATGTTTCAAAACTTGGGACAACATGGTGAAGCACATGCAATGTCACAACGAGAGAAATCACCAATGTACTTTTTGCGCGATCAGTTACAAAAGGAAGGTCTCTTTGATGGCACATATGAAAACACACGAACGTGCGACTGTTTCGGATCACATAATTGATGGGGAAGAAACTCTTAATGGGGTTTGTGACGTGAAAGTGGAAAATTTGGAGGTTATCTGCGACACAATGGTCGCGTCGGAGATTATAACTGAATATCATATTTATTCTTCGAAGTTAAAGGACGAAGATATGGAGGTGCCGAAGTCATTGCTCGATGCACACATCACAAAACCTGACATTGACGCAAAACAGGAAATTTCGATGTCTCAGATATCATCCTCAAGCTGGCCAGTGTTGAACGCCGCCGAGGACGGTTTTGATGAAATCGCGGACTTGGCGGACGTAAATAACATAACAACCAGACGAGCGTGGAACCCCGCGGAGGATGATTTCATGGAAGCCTTAGATAAAATCGACCTAGACAAATTCGTGTTTGAGAACATGTCCGCCAAAGATTGTACACAAACAAAAGATATAGAACATGAGCCCGGACGTAAAGTCGAAGCATCGCGGTCAACACCGTTATCTAGCGCGAACTCACCGGTTGATGTATGTGTTGATCGTTGA
- Protein Sequence
- METQFSSINYSTLTNDTFEKIFLQSLQPQVNGNYYKCEFCDKDFATPTDLKTHHLLHTDELLHTDELLHTDERRHQCDFCTKTFKTRKYMKVHRKTHTNEQIHKCKICSKCFSFRIVMLRHMKSHAAERNYQCDLCTKRFKTKGGVTFHMKTTHNNERKYKCEVCLKRFKTKQNLQLHAELHGANDEGSVHDGKLSRAKTHNERNHKCEICNKRYKTRRYLLNHMTRHTTEKNFICDICDKSFKTKEDIGTHLKKTHCRERNYKCDICTKCFKTKQSVTVHMKRHVRRGTKTILDVEGQVADKLEMQLITEECNIKNKELEIDVDHDNMENTAMNEIFLEVKPELTEILNMTESDYTSQHPNVISNNLEMEFKSELSPPNDERNQKCHNCEQCFKTKKTLLQHMTCHSNERNHKCNICTQGFKRRYSIMLHMKRHGKNHICNVCVASFISRHNLMKHMERHTDGRNHKCVLCAKLFKRECELYTHVKIHCAKKCRDVTEEEKVIVSNSLMNSHVAKPGLVEVNPDSSNVDIEDFLSKSVIEKKKNNSYVNENDLYPEVKIEPTEILKMSLTDSTSFPWPSIVGDNLMIECKNECSLPEIVESGQRKQTFVTKLDDIFQTSNTNCTPISLGNLMSKTISSLQDIVNCVSQDSSSSSNKVEDSSKNKAVEIRNHTCDICEKSFKAKYLLCRHMEIHSERKYKCDICTKSFKTRNILVNHIKCHSNVKNHKCGICSKSFRRNSTMRKHMKCHTNERNHKCNVCSKCFKTWDNMVKHMQCHNERNHQCTFCAISYKRKVSLMAHMKTHERATVSDHIIDGEETLNGVCDVKVENLEVICDTMVASEIITEYHIYSSKLKDEDMEVPKSLLDAHITKPDIDAKQEISMSQISSSSWPVLNAAEDGFDEIADLADVNNITTRRAWNPAEDDFMEALDKIDLDKFVFENMSAKDCTQTKDIEHEPGRKVEASRSTPLSSANSPVDVCVDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -