Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:8920-10584[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.3e-05 0.0051 18.2 1.4 1 23 130 152 130 152 0.98

2 15 8.9e-05 0.0063 17.9 2.5 1 23 158 180 158 180 0.99

3 15 0.00046 0.032 15.7 5.2 1 23 186 208 186 208 0.94

4 15 0.0015 0.11 14.1 5.7 1 23 214 236 214 236 0.97

5 15 0.00028 0.02 16.3 5.0 1 23 242 264 242 264 0.99

6 15 0.00057 0.04 15.4 2.2 1 23 270 292 270 292 0.98

7 15 0.00065 0.046 15.2 5.9 1 23 298 320 298 320 0.98

8 15 0.00068 0.048 15.2 5.6 1 23 326 348 326 348 0.98

9 15 0.00029 0.021 16.3 3.5 2 23 355 376 354 376 0.97

10 15 0.00061 0.043 15.3 1.6 1 23 380 402 380 402 0.98

11 15 0.00018 0.013 16.9 4.8 1 23 408 430 408 430 0.99

12 15 8.9e-06 0.00063 21.1 2.9 1 23 436 458 436 458 0.99

13 15 7.7e-06 0.00054 21.3 2.2 1 23 464 486 464 486 0.99

14 15 7.4e-05 0.0053 18.2 1.9 1 23 492 514 492 514 0.98

15 15 0.00042 0.03 15.8 2.4 1 23 520 542 520 542 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.3e-05	0.0051	18.2	1.4	1	23	130	152	130	152	0.98
2	15	8.9e-05	0.0063	17.9	2.5	1	23	158	180	158	180	0.99
3	15	0.00046	0.032	15.7	5.2	1	23	186	208	186	208	0.94
4	15	0.0015	0.11	14.1	5.7	1	23	214	236	214	236	0.97
5	15	0.00028	0.02	16.3	5.0	1	23	242	264	242	264	0.99
6	15	0.00057	0.04	15.4	2.2	1	23	270	292	270	292	0.98
7	15	0.00065	0.046	15.2	5.9	1	23	298	320	298	320	0.98
8	15	0.00068	0.048	15.2	5.6	1	23	326	348	326	348	0.98
9	15	0.00029	0.021	16.3	3.5	2	23	355	376	354	376	0.97
10	15	0.00061	0.043	15.3	1.6	1	23	380	402	380	402	0.98
11	15	0.00018	0.013	16.9	4.8	1	23	408	430	408	430	0.99
12	15	8.9e-06	0.00063	21.1	2.9	1	23	436	458	436	458	0.99
13	15	7.7e-06	0.00054	21.3	2.2	1	23	464	486	464	486	0.99
14	15	7.4e-05	0.0053	18.2	1.9	1	23	492	514	492	514	0.98
15	15	0.00042	0.03	15.8	2.4	1	23	520	542	520	542	0.99

Sequence Information

Coding Sequence: ATGGAAACCGATGTAAATTCCAACTCTGAAATTTCAAAATCCACAGCTTTGCTCCCAAAGCAACAATCTTGCTACGAATATTCTCCTATTGACGTTGTTCACGATGAAGTAAAATGGCCCTTTACCGTGAAGAAAGAGAATTACCAAGTTTCAAACACTGGAATCGCACCTAATAAGATCAGAATTAAATTGGACCTCGGCGACGACGATTCATCGAACGTGACAAGAGAAGTCGTCAAAGACATCAAATTAAACACCGAAGAAGAAATCAAAAGTGAAATTTTCGACGAAAACGACGTGCGCCCCAACGAAGGAAGTAACTGCAACGTTTGCATTAAGTCATTCACAACCGAAGAAGTTCCACAAAGACAAATCGGCAAAGTTAACTACGAATGCGAAGTTTGCGACAAACGTTACGCAACGAAAAAATGCCTGTCGGGACACATCAAGATACACACCGGCAAGACGAACTACAAGTGCGAACTTTGTGgtaaatacttcaaaaaatatatatatttatcgcAACACGTCAAAACGCacaacgaagaaaaaaattacacgtgtgaaaaatgtaacaaaagctTTGCAAATAAGCGATGTCTAACCAATCACGACAAAACGCACACTGGAGATAGAAATCACAAATGCAAAGCTTGCAGCAAATGTTTTGCATCGAAACGAAGTCTGTTGCGACACGTCGAAAGACACACGggtgaaagaaattataaatgcgaaacTTGTAATAAACGCTACGCGACGAAACAATGCCTGTCGCAACATGTCAAAACACACACCGGCGATAGAAATCACAAATGCGATTCGTGCGAGCGGAGCTTTGCAACAAGACAAACTTTGTCGCAACACGTCGAAACGCAcagcgaagaaaaaaattacaaatgcgaagtttgcaagaaatgcttcaAAACGAAACAGTGCGTAGCGCAACACATCAAAGCACACGGCGGAGAAAGAATCCACAAATGCGAATTTTGCACGAAACGCTTCGCGACGAAACAACGCCTATCCCGCCACGTCAAAACGCAcaccgaaaataaaaataataaatgtgaactTTGTAACAAACGCTTCACAACCAAACAACGTCTATCGCGACACGTCAAAAACCACACAAGAGATTACAGATGCGACGTTTGCGAAAAATACTTTGGGGCGAAACATCAACTATCACGACACGTCGAAACGCACACCgaggaaagaaattacaaatgcgacgCTTGCACAAAACGCTTCAAAACTAAAGAATGCCTGATGCAACACGTCAAAACGCACGCGGGAGcaaaaaactacaaatgtgaaatttgcgacaaatgcttcaGGGCGAGACGGAGTCTATCGTGGCACGTCAAAACGCACAACGGGGAAAAGAACTATAAATGTGAGGTTTGTGACAAAGGCTTCGTGTCGAAACAATGTTTGTCACGACACGTCATGACGCacgtaggagaaaaaaattataaatgcgaagTTTGCGAGAAGTGCTTCGCATCGAAACAATACCTGTCGTTGCATGTCGTGACACACggcggagaaagaaattacaaatgtgaagtttgtgaGAAACGCTTTACGATTAAACTATATCTGTCAAGACACTCCAAAACGCACTACAGAAAGGTGTCACTGAAACATGAAAGCACACAGTGA
Protein Sequence: METDVNSNSEISKSTALLPKQQSCYEYSPIDVVHDEVKWPFTVKKENYQVSNTGIAPNKIRIKLDLGDDDSSNVTREVVKDIKLNTEEEIKSEIFDENDVRPNEGSNCNVCIKSFTTEEVPQRQIGKVNYECEVCDKRYATKKCLSGHIKIHTGKTNYKCELCGKYFKKYIYLSQHVKTHNEEKNYTCEKCNKSFANKRCLTNHDKTHTGDRNHKCKACSKCFASKRSLLRHVERHTGERNYKCETCNKRYATKQCLSQHVKTHTGDRNHKCDSCERSFATRQTLSQHVETHSEEKNYKCEVCKKCFKTKQCVAQHIKAHGGERIHKCEFCTKRFATKQRLSRHVKTHTENKNNKCELCNKRFTTKQRLSRHVKNHTRDYRCDVCEKYFGAKHQLSRHVETHTEERNYKCDACTKRFKTKECLMQHVKTHAGAKNYKCEICDKCFRARRSLSWHVKTHNGEKNYKCEVCDKGFVSKQCLSRHVMTHVGEKNYKCEVCEKCFASKQYLSLHVVTHGGERNYKCEVCEKRFTIKLYLSRHSKTHYRKVSLKHESTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -