Gspi031656.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:4379097-4380737[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.5e-05 0.0025 19.2 0.7 1 23 73 95 73 95 0.97
2 16 0.0018 0.13 13.8 1.8 2 23 101 122 101 122 0.97
3 16 0.039 2.7 9.6 0.6 3 23 130 150 128 150 0.98
4 16 3.7e-06 0.00026 22.3 2.1 1 23 155 177 155 177 0.97
5 16 0.011 0.79 11.3 0.6 1 23 183 204 183 204 0.81
6 16 0.00011 0.008 17.6 1.0 1 23 210 232 210 232 0.98
7 16 7.2e-05 0.0051 18.2 3.7 1 23 238 260 238 260 0.98
8 16 0.0097 0.69 11.5 8.2 1 23 266 288 266 288 0.98
9 16 0.00034 0.024 16.1 3.5 1 23 294 316 294 316 0.97
10 16 4.1e-06 0.00029 22.1 0.4 1 23 322 344 322 344 0.99
11 16 0.00042 0.03 15.8 6.3 1 23 350 372 350 372 0.98
12 16 0.0089 0.63 11.6 6.2 1 23 378 400 378 400 0.98
13 16 0.00044 0.031 15.7 1.0 1 23 406 428 406 428 0.99
14 16 0.0008 0.056 14.9 0.9 1 23 434 456 434 456 0.99
15 16 7.2e-05 0.0051 18.2 6.4 1 23 462 484 462 484 0.99
16 16 0.025 1.7 10.2 0.6 2 23 487 508 487 508 0.96

Sequence Information

Coding Sequence
ATGTACATTGCAGAAAACGTAATTATGATAAAAGAAGAATATGCAGAGGTTTCTGAACTCACGACAAAAGTGGAACACGATGCACTTGGAGTGAGACAAGTCGTTTCGAATGCAGACGCAAAACCCAAGTTGGAGCTCAACGATTTGTATAACTTTAGTGACACAAAGCCGAATGATCGTTGCGACAGCGATGGCTTCGCAACACCAAACATGTGTCAcatatgtgaaatttgcaagcaATTATTTTCCACTCCGACCGAATTAACAAACCACATCTTAACGCACGACGAAAGCAGCCGAACCTGCGTCGTCtgctttaaaatattcaaaaagacGAAGTACCTGTCTCAACACATGAAAATCCACGCGAACGAGCGAACGTACTGGTGCAAAATTTGCTCCAGGGATTTCCCGAAAGAGTACATTATGCTCAGACACATGAAAACGCACAACGCGAAATCTCACAGCTGCGAGATCTGCCCGAAAAAATTCAAGACTCGCTGGAACCTGTCGAAACATGTAGAGACGCACTGCACGAAGAAGAATTACAAGTGCGAGATATGCGCGAAGAGCTTCAAATCGGAATACGTGCTGGAACACGTCAAATCGCACGGCGGCGAAAGAAACCACACGTGCGAAATTTGCGGCAAGAGTTTCGCGTTGAAGCGCGTGTTGTACCAACATCTGATAACGcacacctacgaaaaaaatcacAGATGCGAGATTTGCGGCAACCGTTTCAAAACGAAGCACGCTCTGCTGGGGCACATGAAATCGCACGTCGACGTACGAAGTCACAAGTGCGAGGTTTGCACGTCGAGTTTCAAAACGAAACATCATTTGTTGTCGCACGAGAAGTCGCACAGCGACGAACGAAATCACAAGTGCGAGATTTGCGGCAAGAGCTACAAAACGAAGAACACCATGTTGCTGCATTCGAAGTCGCACGCCGACGAACGAAATTACGTCTGCGACATTTGCGGCAAAAGTTTCTACGCGAGGAACAGCATCGTGAAACACATGCGGACGCACAccgacgaaagaaattacaagtgcgagATTTGCACGAAGGATTTCAAGACGAAAGAGTGCATGTTGCATCACATGAAGCTGCACAGTGAAGTAAAACCTcacaaatgcgagatttgttCGCGGGCTTTCCACAAGAAGTATCGCATGGTGCAACACATGAAgacgcacaccggcgagagaaacttcaaatgcgaaatttgcgccaAGCGGTTCGTATTAAAACGGACCATGCTGCAGCACATGGAAACCCATGCCGacgaaagaaactacaaatgtggAGTTTGCGCCAAGGGCTTTACGTTAAAACGAAGTATGTTGCAACACTTGAAAACGCACATGagcgaaagaaattacaaatgtgaaatttgcagcaaatgttTCAAAGCAAAACAACACGTGTCCAATCACATGCGGACGCACATCAACGAATGCAGCGTTTGCCAGCAATATTTCGAAAATAGGAAGTTGCTGCTCGAACATAATAAGATACACATGAAAGGAAGGAATAAAAAGTCTAGCACGCATGCTTTTGAGACAGTAGAAATTGGCAACATTCAAAAGGAATACATAAAGCAAGAAAACATAGAAATCGAGAAGGGTgcgtattaa
Protein Sequence
MYIAENVIMIKEEYAEVSELTTKVEHDALGVRQVVSNADAKPKLELNDLYNFSDTKPNDRCDSDGFATPNMCHICEICKQLFSTPTELTNHILTHDESSRTCVVCFKIFKKTKYLSQHMKIHANERTYWCKICSRDFPKEYIMLRHMKTHNAKSHSCEICPKKFKTRWNLSKHVETHCTKKNYKCEICAKSFKSEYVLEHVKSHGGERNHTCEICGKSFALKRVLYQHLITHTYEKNHRCEICGNRFKTKHALLGHMKSHVDVRSHKCEVCTSSFKTKHHLLSHEKSHSDERNHKCEICGKSYKTKNTMLLHSKSHADERNYVCDICGKSFYARNSIVKHMRTHTDERNYKCEICTKDFKTKECMLHHMKLHSEVKPHKCEICSRAFHKKYRMVQHMKTHTGERNFKCEICAKRFVLKRTMLQHMETHADERNYKCGVCAKGFTLKRSMLQHLKTHMSERNYKCEICSKCFKAKQHVSNHMRTHINECSVCQQYFENRKLLLEHNKIHMKGRNKKSSTHAFETVEIGNIQKEYIKQENIEIEKGAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-