Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:3108727-3110872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.4e-05 0.0017 19.7 3.3 1 23 145 167 145 167 0.98

2 15 0.00099 0.07 14.6 1.5 1 23 173 195 173 195 0.91

3 15 0.0012 0.088 14.3 5.6 1 23 201 223 201 223 0.97

4 15 0.0013 0.089 14.3 0.3 1 23 229 251 229 251 0.97

5 15 3.3 2.3e+02 3.6 5.5 1 23 257 279 257 279 0.91

6 15 0.0033 0.24 13.0 1.8 1 23 285 307 285 307 0.92

7 15 7.9e-05 0.0055 18.1 2.8 1 23 313 335 313 335 0.97

8 15 6.6e-06 0.00047 21.5 1.3 1 23 341 363 341 363 0.98

9 15 8.3e-05 0.0058 18.0 2.7 1 23 369 391 369 391 0.98

10 15 2.6e-05 0.0018 19.6 0.6 1 23 397 419 397 419 0.97

11 15 8.3e-05 0.0059 18.0 0.3 2 23 426 447 425 447 0.97

12 15 0.00095 0.067 14.7 0.1 2 23 459 480 458 480 0.97

13 15 2.8e-05 0.002 19.5 4.4 1 23 486 508 486 508 0.98

14 15 5.4e-05 0.0038 18.6 1.9 1 23 514 536 514 536 0.98

15 15 0.00067 0.047 15.2 1.8 1 23 542 564 542 564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.4e-05	0.0017	19.7	3.3	1	23	145	167	145	167	0.98
2	15	0.00099	0.07	14.6	1.5	1	23	173	195	173	195	0.91
3	15	0.0012	0.088	14.3	5.6	1	23	201	223	201	223	0.97
4	15	0.0013	0.089	14.3	0.3	1	23	229	251	229	251	0.97
5	15	3.3	2.3e+02	3.6	5.5	1	23	257	279	257	279	0.91
6	15	0.0033	0.24	13.0	1.8	1	23	285	307	285	307	0.92
7	15	7.9e-05	0.0055	18.1	2.8	1	23	313	335	313	335	0.97
8	15	6.6e-06	0.00047	21.5	1.3	1	23	341	363	341	363	0.98
9	15	8.3e-05	0.0058	18.0	2.7	1	23	369	391	369	391	0.98
10	15	2.6e-05	0.0018	19.6	0.6	1	23	397	419	397	419	0.97
11	15	8.3e-05	0.0059	18.0	0.3	2	23	426	447	425	447	0.97
12	15	0.00095	0.067	14.7	0.1	2	23	459	480	458	480	0.97
13	15	2.8e-05	0.002	19.5	4.4	1	23	486	508	486	508	0.98
14	15	5.4e-05	0.0038	18.6	1.9	1	23	514	536	514	536	0.98
15	15	0.00067	0.047	15.2	1.8	1	23	542	564	542	564	0.98

Sequence Information

Coding Sequence: ATGGCAACTAATCTAGATTTCAAATGCACAACCATCGGAGTAAAATCGGAATCAATAGAATGCCCAGCCTTATTTACAAACCCACAGTCTTACCTGGAATCTTCCGATGATGCTGACGTTAAACAAGAATGTGCTGTTActataaaagaagaaatatttgaaGCTTATGTTCCCACGATCGTTGGTGGGGCACAAAATGTTTCAAACGCTGGATTTGCACCTAACGAAGTCAAAGTTGAGTTGAATGTCAGTGACGATGATTTGTTGAATCCTTGCATCAAGGAAGAACCACAAGAACAAGACATTGACAGTAAAAGTGGTATTGGAACATCGatcgattttaatatttacagcaGCGATTGTAAGCCGCACGACGACGACGAAAAATACGACTGCAAAGTTTTTTCCACACCGTTAACAAGCGAAGTGAAccacaaatgcgacgtttgcaaCAGGAGCTTCTCGACGAAGACGTACCTCGCGATGCACGTGAAACGTCACACCGGCGAGAGCgactacaaatgcgaaatttgcggcaAGTGCTTCGCGACGAACCAAATCAAAATGCGACACCTTGAAGTGCACACCGGCCAGCGAAatcacaaatgcgaaatttgcaacaaacacTTCACGACGAAACGTTCCATGTTGGAACACACGAAGGCGCACACCCAAACGCCGAATCACCGATGCGAAATTTGCGATAGGGGCTTCATGGCGAAATCCGCCCTGGCGCTTCACTTGGACAGGCACAGGAACGAGCGAAAGTACAAGTGCGACGTCTGCTGCAAATCCTTCACGTCGAAAACGTACCACGCGATGCACGTCAAATGGCACACCGGCGAGAGGAATTACTTGTGCGAAATTTGCGGGAAGTGCTTCACGACGAATCAGATCAAGCTGCAGCACATGCAGGTGCACAGCGGCGAGAGGAACCACAAGTGCGGGCTTTGCGACAAACGGTTCACGACGAAACGTTACATGGCCGAGCACATGAAGGCGCACACCGCGAAAACGaactacaaatgcgaaatttgcaataagTCGTTCGCGACGAAGCAATACATGACGCAACACGCGAAGGTGCACGCGGACGAGGAAATATACAAATGCGACCTTTGCGGCAAGTGCTACGGGACGAAGAAATATCTGCTGCAACACGTGAAGGCGCACCGCGACGCTAGAATCTTTGATTGCGAAACTTGCGGGAAACTGTTCGCGACGAAAAATAATCTTTCGAAACACGCCAAGATCCATTCGGGGGACAGGAACCAAAAATGCGACATTTGTGGGAAATACTTTGCAACGGAAAAGTATTTGGCGATGCATTTGAAGTGGCACAGTGGGGAAGTGCACACCGGTAAGAGGAACCTCAAGTGTGAAGTCTGCGACAAACGGTTTATAACGGAACTTGCCGTGTTGGAGCACATGAAAGTGCATACCGGAGACGTGAGTTATAAATGCGAACTTTGCGATAAATGCTACACGACAAGGCAAAACATGCTGCAACATATGAAATTGCACACCGACGAGCAAAGCCATAAATGTGACGTTTGCAATAAGCCCTTCGCGATAAAACGGTATTTGGCGCAGCACATGAAACGACACACCGGAGACGGGGAGTACGACTGTGGATATTGCAATCagcattttattcaattaaaagcgTTTTTGGAACATATGAAAATGCACCCTCGGGAAAGgagtgaaagatctgttaaaaatattcattttatggTGCCAACAACTTCAATGGAAGGATTTAACGAGATTGACAAATTATTGATTAATGAAGAGGCTGGTACATTACTGAAGAACAATTTGGAGACCAACGATGaaaCCATTGTTAGTAAGGAAGAGGAACCCAAATCAACAGATAGTACACGTTTATGGCAAGCGCTCAAGAATGACATTATAGTTAAGGAAGAACGTACGATGGACACCTCATAA
Protein Sequence: MATNLDFKCTTIGVKSESIECPALFTNPQSYLESSDDADVKQECAVTIKEEIFEAYVPTIVGGAQNVSNAGFAPNEVKVELNVSDDDLLNPCIKEEPQEQDIDSKSGIGTSIDFNIYSSDCKPHDDDEKYDCKVFSTPLTSEVNHKCDVCNRSFSTKTYLAMHVKRHTGESDYKCEICGKCFATNQIKMRHLEVHTGQRNHKCEICNKHFTTKRSMLEHTKAHTQTPNHRCEICDRGFMAKSALALHLDRHRNERKYKCDVCCKSFTSKTYHAMHVKWHTGERNYLCEICGKCFTTNQIKLQHMQVHSGERNHKCGLCDKRFTTKRYMAEHMKAHTAKTNYKCEICNKSFATKQYMTQHAKVHADEEIYKCDLCGKCYGTKKYLLQHVKAHRDARIFDCETCGKLFATKNNLSKHAKIHSGDRNQKCDICGKYFATEKYLAMHLKWHSGEVHTGKRNLKCEVCDKRFITELAVLEHMKVHTGDVSYKCELCDKCYTTRQNMLQHMKLHTDEQSHKCDVCNKPFAIKRYLAQHMKRHTGDGEYDCGYCNQHFIQLKAFLEHMKMHPRERSERSVKNIHFMVPTTSMEGFNEIDKLLINEEAGTLLKNNLETNDETIVSKEEEPKSTDSTRLWQALKNDIIVKEERTMDTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -