Gspi031569.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390740.1:3813841-3817820[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0019 0.13 13.8 3.7 1 23 65 87 65 87 0.98 2 17 4.3e-05 0.003 18.9 4.9 1 23 94 116 94 116 0.98 3 17 0.026 1.8 10.2 4.5 1 23 122 144 122 144 0.97 4 17 0.00011 0.0075 17.7 2.7 1 23 150 172 150 172 0.97 5 17 0.00045 0.032 15.7 1.9 1 23 175 197 175 197 0.94 6 17 0.0008 0.057 14.9 2.7 1 23 202 224 202 224 0.98 7 17 0.0015 0.1 14.1 2.0 1 23 236 258 236 258 0.97 8 17 5.4e-05 0.0038 18.6 3.9 1 23 264 286 264 286 0.98 9 17 0.0035 0.25 12.9 2.8 1 23 320 342 320 342 0.95 10 17 1.2e-05 0.00084 20.7 5.8 1 23 345 367 345 367 0.98 11 17 0.0014 0.099 14.2 4.3 1 23 372 394 372 394 0.98 12 17 2.4e-06 0.00017 22.9 1.1 1 23 400 422 400 422 0.99 13 17 1.1e-05 0.0008 20.7 1.9 1 23 428 450 428 450 0.98 14 17 4.4e-05 0.0031 18.9 3.0 1 23 456 478 456 478 0.98 15 17 0.00018 0.012 17.0 2.0 1 23 483 505 483 505 0.98 16 17 0.0016 0.12 13.9 1.0 1 23 511 533 511 533 0.99 17 17 0.0033 0.23 13.0 5.3 1 23 538 560 538 560 0.97
Sequence Information
- Coding Sequence
- ATGAACGACAATTCATCGACATCCAAATACGAGAATAACGCCGAGTGTGTTTACGTCGAAGTTAAACCTGAGCCGACAGAAATTTTTACTTCAGCTGATAATGAGCTGGAACGTGTCAAAGAAGAATTTGACGGCATTGAAGAACAGCACGAAATTGCAGCCGCAAAATTGGACAATCGTGAAGATAAACCCCACAAATGCGATTTTTGCGCGAAAACTTTCAAAAGACGTCAATACATATTGGCTCACATGAAATTGCACACCGAAGGGGCGGAACAGcacaaatgcgaagtttgcTCCAAGAGcttcaaaacgaaaaaatacatGCTGACGCACATGAAAATTCACGTCGTGGAACGTAACTACGCCTGCGAGATTTGCACGAAGAGTTTCAAGTGGAAGCACCACATGGTGCAGCACACAAAATTGCACAGGGAAGACGTAAATCACAAATGTCCGATGTGCTCTAAGAAGTTCACATCAAAGGAAGGCATGTTGCGACACGTCAAGTTACACACAAGTCACAAGTGCGACGTTTGCACGAGGAGTTTCAAAACTAAGTCGCGCATGTTGGTGCACATGGGCGCGCACACGAATGAAACTTATAAATGCAACGTTTGCCAGAAGAGTTTCAAGTGGAAGCAAAGTATGTCGCAGCACATGAAATTGCACTCTGAGGAACGCAAGAGAAATAACGACGAAAGttacaaatgcgacgtttgctcCAAGAGATTCGCTCGCAAGCAGCGAATGTTCGAACACGTCAAGTTGCACTCGGAAGAAAAGAATCACAAATGCGACATTTGCGCAAAGAGTTTCAAGACGAAAAAGTACATGCTGACGCACATGAAAGTTCACGTCGTTGACAGAAATCACAATTGTATGGTTTGCTTGAAAAGTTTCAAATGGAAGCACCACATGTTGCAACACACGAAGTTGCACGCCGATGACACGAATCATAAATGCCCGACCTGTTCCAAGAAATTTATATCGAAGCAGAGCATGTTGCAACACGTAACGTTGCACAAAATCCACAAATGCGACGTCTGCACCAGGAGTTTTAAAACCAAGTCGCACATGCTGGTGCACATGAACACCCACAACAAAGAAAGTCACAAATGCCAGATTTGCCCCAAGAGCTTCAAATGGAAGCAAAGCATGTTCAAACACATGAAGTTGCACTCGGATAACACTAACTACAAATGCGGCGTTTGCACAAAGAGCTTTAAAACGCGAGTGAACATGTTGGTGCACATAAAAACTCACAGCGACGTAAGAACGTACAAATGCACGGTTTGTCCAAAGAGTTTCAATCGCAAGCAGAACATGTTCGATCACGTGAAGCTGCACTCCGACGAGAGAAACCACAAATGTGATATTTGCACTAGGCGTTTTAAAACGAGGGCCTATATGATGGTGCACATGAAGATACACGCCGAGAAAAGtcacaaatgcgacgtttgcgcCAAGAGCTTCAAGCGGGAGCGAAATGTCCTCGAGCATATGAAGTTGCACTCCGatgaaagaaactacaaatgtggCGTTTGCATCAAAAGTTTTAAAACGCGGCCGCACATGTTGGTGCACGCGAGAGTGCACTCCAATGAAATTCACAGGTGCAAGGTTTGTTCAAAGAGCTTTAAATTGAAACAGAGTATTTTGCGACACATGAAATTTCACCCCGACACTGATTCAATTCAAAACGATTCAGTTATGAAGATTGAAGTGGATGTTAAGGAAGAAGATGTGACCATTATGCATGgGAAGAAATCTGGTAATTCTCAAGAACGGATGAGGCAGTACAGAAAGCACATGGGTATGAAGCCACATTCAGCTGCCCAGTGTACCAGAGGTCGTTCAGCATGA
- Protein Sequence
- MNDNSSTSKYENNAECVYVEVKPEPTEIFTSADNELERVKEEFDGIEEQHEIAAAKLDNREDKPHKCDFCAKTFKRRQYILAHMKLHTEGAEQHKCEVCSKSFKTKKYMLTHMKIHVVERNYACEICTKSFKWKHHMVQHTKLHREDVNHKCPMCSKKFTSKEGMLRHVKLHTSHKCDVCTRSFKTKSRMLVHMGAHTNETYKCNVCQKSFKWKQSMSQHMKLHSEERKRNNDESYKCDVCSKRFARKQRMFEHVKLHSEEKNHKCDICAKSFKTKKYMLTHMKVHVVDRNHNCMVCLKSFKWKHHMLQHTKLHADDTNHKCPTCSKKFISKQSMLQHVTLHKIHKCDVCTRSFKTKSHMLVHMNTHNKESHKCQICPKSFKWKQSMFKHMKLHSDNTNYKCGVCTKSFKTRVNMLVHIKTHSDVRTYKCTVCPKSFNRKQNMFDHVKLHSDERNHKCDICTRRFKTRAYMMVHMKIHAEKSHKCDVCAKSFKRERNVLEHMKLHSDERNYKCGVCIKSFKTRPHMLVHARVHSNEIHRCKVCSKSFKLKQSILRHMKFHPDTDSIQNDSVMKIEVDVKEEDVTIMHGKKSGNSQERMRQYRKHMGMKPHSAAQCTRGRSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -