Gspi007199.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390732.1:31732881-31736404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0047 0.33 12.5 0.4 2 22 211 231 210 234 0.89 2 13 0.17 12 7.6 2.1 2 23 242 262 242 262 0.97 3 13 1.9e-07 1.3e-05 26.4 2.4 1 23 268 290 268 290 0.98 4 13 8.3e-06 0.00059 21.2 1.1 1 23 296 318 296 318 0.97 5 13 0.008 0.56 11.8 2.7 1 23 323 346 323 346 0.97 6 13 0.00014 0.01 17.3 2.6 1 23 369 391 369 391 0.96 7 13 1.1e-05 0.00079 20.8 0.7 1 23 396 418 396 418 0.95 8 13 6.6e-07 4.6e-05 24.6 4.3 1 23 424 446 424 446 0.97 9 13 9.3e-06 0.00066 21.0 2.1 1 23 453 475 453 475 0.95 10 13 8.3e-06 0.00058 21.2 0.6 1 23 481 503 481 503 0.93 11 13 4e-06 0.00028 22.2 2.0 1 23 509 531 509 531 0.97 12 13 4.1e-05 0.0029 19.0 1.1 1 23 537 559 537 559 0.98 13 13 0.007 0.5 12.0 2.6 1 20 565 584 565 589 0.92
Sequence Information
- Coding Sequence
- ATGGATGCATTGATGAAAAATCTATCACTTAATCCGAACATAATTTTATACAGATCTGTAAACGATGCCGTGGTGCATTTCGATCAAATATGCCGAACCTGTCTCTCCAGTGAAGACATCAAGTGTATATTGGACGTTGTGTATGAAAATATGCCTTTAAGCGTGCTACTCGAGCAACATGTTTCAATAAAGATAGCGAAAGACGATTTGTTACCTAAACACATTTGTGACAATTGTATTgtcgatttaataaaatgttaccaCTTTAAAACAAAATGCTTGCTGTCTGAGAAAACTCTTGATGAGATCGTGAAATACAATGAAGATAGGAAAACAGTCACCAAAGACATTAAAACTGACAGACCTGTAGATGCACCGTTTGTGCTGCAACACATCGTCGAAAACGATTCTGGTGAAGCAACACCAACAGACATGCACGAAAACATGGTAGAAATTGCTGACAGTGTAAAAGACGAAACAATAAATATCGAAGACTCCGCCAATACTGAAGACTTGACAAATATGGAAGACTACATAAACCTATCTGATTATGAAAATGATATTGTCGTCAAAAGTAAACCTAAACCAACTGTATTGAAAGAAAATGTGCGTGTGTTTATGCCAGTCCTCAAGTGCAACCCATGCGGTATAAGTTTCAAAAGCAGGACAGAGCTTATTGAACATAGAAAGGAAGAGAAACATATAAGAATCCGCAAAACACGCACATGTCTTATATGTGCGAAGGTGTGTTACAGTGGCTATTTTAAATCACATTTGAGAACACACAACAATGAAAGGCCGTTTAAGTGCAAACAGTGTTCTAGAGCGTTCAGCAATAATAACAACTTGAAACGACATATGATGATTCATACTGGAGAGAGACCTTTTATTTGTGAGATTTGTGGGAAAGGTTTCAACCACTTGTTCAAGCTCCAAGTACACCAGAGGTGGCATTTCAAAACATCGTTCACCTGCACTTATTGTAGCGAGATTTACACTCATGTACGTGCATACCGAATGCACATGCTCCGAAGTCACAGCCTTATGGATAATGAACGTAAATCATTGTTTACGGAACTGGGGAAATTTACCATGGCAAAGGAATTTCCGTGCAATATTTGTGACAAGGTATTCCACAACTCAAGTCGTTTATGGGCACATAAGTTACATCATCgtatgaaaacatttttgtgcAGTGACTGCGACAAAAGTTTCTATACAAAATCTGAGCTGGATTCACACGCTAAAATACACACTGGTGAAAAGCCGTTCTGCTGTTCGGACTGTGGAAAGAGCTTTACACACAAGGCCAACctaaaaacacatttaataatACACGGCACCGAGATGAAGACGTTTCTCTGCAGTGACTGCGGTAAGAGTTTCCATAGAAAATATGCATTGGAGATGCATGCTAAAACTCACACAGGTGAAAGACCATTTCTCTGTTTGGACTGCGGAAAGACATTCACACAGCAGGCCAGCCTGAAGACACATTCGTTGATACATACCGGTGAAAGATCTCACATATGTCCAATTTGTTCCAAATCTTTTGTGCAGTCGGCCCATCTAAACTACCACCTGCTGACGCACAGTGAAGAGAAATCATTTGTTTGTTCGTACTGCAGCAAGGGGTTTAGATTGAAAGGAACGTTGACGGTTCACAAACGCATTCATACTGGCGAAAAACCTTTTGTGTGTGACATTTGCGGGAAAGGATTCCACGCTTCCACCAACATGACAAGGCACAAACATTTTAAGGGACATTTTAAGTAG
- Protein Sequence
- MDALMKNLSLNPNIILYRSVNDAVVHFDQICRTCLSSEDIKCILDVVYENMPLSVLLEQHVSIKIAKDDLLPKHICDNCIVDLIKCYHFKTKCLLSEKTLDEIVKYNEDRKTVTKDIKTDRPVDAPFVLQHIVENDSGEATPTDMHENMVEIADSVKDETINIEDSANTEDLTNMEDYINLSDYENDIVVKSKPKPTVLKENVRVFMPVLKCNPCGISFKSRTELIEHRKEEKHIRIRKTRTCLICAKVCYSGYFKSHLRTHNNERPFKCKQCSRAFSNNNNLKRHMMIHTGERPFICEICGKGFNHLFKLQVHQRWHFKTSFTCTYCSEIYTHVRAYRMHMLRSHSLMDNERKSLFTELGKFTMAKEFPCNICDKVFHNSSRLWAHKLHHRMKTFLCSDCDKSFYTKSELDSHAKIHTGEKPFCCSDCGKSFTHKANLKTHLIIHGTEMKTFLCSDCGKSFHRKYALEMHAKTHTGERPFLCLDCGKTFTQQASLKTHSLIHTGERSHICPICSKSFVQSAHLNYHLLTHSEEKSFVCSYCSKGFRLKGTLTVHKRIHTGEKPFVCDICGKGFHASTNMTRHKHFKGHFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -