Gspi029680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390739.1:17280354-17282492[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.005 0.35 12.4 2.0 1 23 14 36 14 36 0.97
2 18 7.4e-05 0.0052 18.2 3.2 1 23 42 64 42 64 0.99
3 18 0.0044 0.31 12.6 3.4 1 23 70 92 70 92 0.98
4 18 0.002 0.14 13.7 3.8 1 23 98 120 98 120 0.98
5 18 0.0079 0.56 11.8 2.7 1 23 126 148 126 148 0.97
6 18 9.6e-06 0.00067 21.0 0.9 1 23 154 176 154 176 0.99
7 18 0.00059 0.041 15.4 4.6 1 23 182 204 182 204 0.99
8 18 3.9e-05 0.0027 19.1 6.2 1 23 210 232 210 232 0.98
9 18 0.00042 0.03 15.8 5.5 1 23 238 260 238 260 0.99
10 18 0.0007 0.049 15.1 0.9 1 23 266 288 266 288 0.97
11 18 0.0003 0.021 16.3 0.9 1 23 294 316 294 316 0.98
12 18 0.023 1.6 10.3 4.5 1 23 326 348 326 348 0.98
13 18 0.00022 0.015 16.7 4.5 1 23 354 376 354 376 0.98
14 18 0.00012 0.0082 17.6 4.1 1 23 382 404 382 404 0.99
15 18 0.0015 0.11 14.1 4.9 1 23 410 432 410 432 0.98
16 18 0.00096 0.068 14.7 4.8 1 23 438 460 438 460 0.97
17 18 0.00022 0.016 16.7 3.4 1 23 466 488 466 488 0.99
18 18 0.00014 0.0098 17.3 6.4 1 23 494 516 494 516 0.98

Sequence Information

Coding Sequence
ATGGAAAAAAAGATCTTGTTGAACCAAAAAGAAACCGATCACAAATGTGAGATTTGCTCCAAGAGTTTCAAATGGAGGTCCAGCATGTTGGTACACGTGAAATTACACGGCGAACGAATCGATtacaaatgcgagatttgctCCAAGATTTTTGCGTCGAAGCACTACATGTTGAGACACGTGAAACGACACAACGAAGGGAAGGaccataaatgcaaaatttgtctCAAAGGCTTCAAATCGAAGCGCTACATGCTGGAACATGTGAACTCGCACACCGAAGGGAAAATCCACAAATGCCAGATTTGCGCCAAGGATTTCAAGTTCAAGTATTACATGCTGGCGCACTTGAAGACACACGTCGAGGGAAACGTCCACACGTGCAACGTATGtttcaaaagtttcaaatgGAAGGCGAGCATGTCGAGACATATGGAGTTGCACAACGAAGGGATGAAGTACAAATGCAAGGTTTGCGGCAAGGGTTTCAAGTGGAGGTCCAATATGTTGGCGCACATGAAGTCGCATTGTAAAGGGTACGATTATAAATGCAAGTTTTGttataagaattttaaatcaaagtaTAGTATGTCGGCGCACGTGAAGTCGCACGCTGCAGGATTCGATCATAAATGCAAGATCTGTTCTAAGAGTTTTCGATCAAAGTACTATATGTTGACGCACATGAAATCACACACTGaaggatttatttataaatgcaaaatttgttcaaaaaattttaaattcaaacactACATGTTGGCGCATGTGAAAACGCACGCCGAAGGAAACCGACATGAGTGCAGCATTTGCTTGAAGATCTTTACATGGAAGGCCAGTTTGCGAAAGCACATGGAAGTGCACACCGaaggaaataattacaaatgcgagatttgctCGAAGAGTTTTAAGTTAAGGGCCTCGATATTGAAGCACGTGAAGCTACACACCGGAGATAACGCGCAGCGTGCCTTACACACCTGCAAGATTTGCTCAAAGAGTTTCGAATGGAGGTGCAATATGTTGGCGCACTTGCGGTCACACGCCGCAGAACGTCGACATAAATGCAACGTCTGTTCCAAGAGTTTTACGTCAAAGTATAGCATGTCGATGCACGTGAAATCGCACACCGAAACACACGATTACAAATGTCAGATTTGTTTCAAGAGTTTTAAATCAAAGTACTACATGTTAACGCATGTGAAATCGCACATTAAAGGAAACATTCACAAATGCACGTATTGCACCAAGAGCTTCAGATTGAGAGCGACGATGTTGAAACACGTGAAGTCGCATACGGGGGGAAACGATCACCGATGCAATATCTGCTCcaagatttttaaatcaaagttTTACATGATGAAGCACGCAAAGTCGCACATCGCCGGCAACGCCTATCAATGCCAGGTTTGCTTAAAGAGTTTCAAATCGAAGTATCGCATGTTGACGCATATGAAATCGCACTCTGAAGGAACTGATCATAAATGCAAGATTTGCACCAAGAGTTTTAAATCGAAGAAGTACATGTTGAGGCATGTGAAATCACACAAAGAAAACGGATATCACGAACAATTCAGTGTGGAAGGTGACGGCGACGATGTGACAATAGAGCACTTGAAACTAAGCACTGCTTCTGGCAAATTGGAAACTAGTCCCTTGACAAACGAAAACATCACTGATCCCACTCTTCGTGAAGTGAAAATCGAAGCAACGGAAATTTTTGATTCCTCATCATTCAAATCAGAAGTAGAAAGCGAACCAAATTCTTTGATTGGATCCATTGTGGTCAAAGAAGAGGAGGCGGACGAACTCATCGTGAAATCTGAGATTACGCCATcagaacaagaaatttcaaatacgTTTGCCGAAAATTGTGCAATGAACTGTTCGGTTTCTGAAAGTGGTTTAAAGCTTTTTTGGAACAACGTTGGAAAGATACGTTACGTTGAAGCAAAATCAGAAATCGACGTTAATGATTAA
Protein Sequence
MEKKILLNQKETDHKCEICSKSFKWRSSMLVHVKLHGERIDYKCEICSKIFASKHYMLRHVKRHNEGKDHKCKICLKGFKSKRYMLEHVNSHTEGKIHKCQICAKDFKFKYYMLAHLKTHVEGNVHTCNVCFKSFKWKASMSRHMELHNEGMKYKCKVCGKGFKWRSNMLAHMKSHCKGYDYKCKFCYKNFKSKYSMSAHVKSHAAGFDHKCKICSKSFRSKYYMLTHMKSHTEGFIYKCKICSKNFKFKHYMLAHVKTHAEGNRHECSICLKIFTWKASLRKHMEVHTEGNNYKCEICSKSFKLRASILKHVKLHTGDNAQRALHTCKICSKSFEWRCNMLAHLRSHAAERRHKCNVCSKSFTSKYSMSMHVKSHTETHDYKCQICFKSFKSKYYMLTHVKSHIKGNIHKCTYCTKSFRLRATMLKHVKSHTGGNDHRCNICSKIFKSKFYMMKHAKSHIAGNAYQCQVCLKSFKSKYRMLTHMKSHSEGTDHKCKICTKSFKSKKYMLRHVKSHKENGYHEQFSVEGDGDDVTIEHLKLSTASGKLETSPLTNENITDPTLREVKIEATEIFDSSSFKSEVESEPNSLIGSIVVKEEEADELIVKSEITPSEQEISNTFAENCAMNCSVSESGLKLFWNNVGKIRYVEAKSEIDVND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-