Gspi031240.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:1464479-1465960[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 4.3e-06 0.00031 22.1 1.6 1 23 135 157 135 157 0.99
2 13 0.0026 0.19 13.3 1.0 2 23 164 185 163 185 0.96
3 13 0.00017 0.012 17.0 4.1 1 23 191 213 191 213 0.98
4 13 2.2e-06 0.00016 23.0 2.1 1 23 219 241 219 241 0.99
5 13 2.1e-05 0.0015 19.9 3.6 1 23 247 269 247 269 0.99
6 13 9.3e-07 6.6e-05 24.2 1.4 1 23 275 297 275 297 0.98
7 13 2.3e-06 0.00016 22.9 0.4 1 23 302 324 302 324 0.97
8 13 0.0028 0.19 13.2 1.0 1 23 330 352 330 352 0.98
9 13 0.00075 0.053 15.0 4.8 1 23 357 379 357 379 0.99
10 13 2.8e-05 0.002 19.5 2.3 1 23 385 407 385 407 0.98
11 13 0.0014 0.097 14.2 3.0 1 23 413 435 413 435 0.98
12 13 1.3e-05 0.0009 20.6 4.4 1 23 441 463 441 463 0.98
13 13 1.7e-05 0.0012 20.2 2.0 1 23 469 491 469 491 0.99

Sequence Information

Coding Sequence
ATGGAGACTGACGTACGTGATTCAAACATCCCGATCGTGGAAGTCAAACCCGAACCGACAACTTTAACCCCAAAACTGGAGGTTTGCTTTGCACATTTTAATGATGAAATCGATCGTAAAAATACTGTTGTAATTAAGGAAGAGGAGCGTATGGATCCTTCTGCATCGATCACAGAAATAAAACTTGATTCCGTTGGTGttgcacaaaatatttcaaatgggaTTACATGTAACgatattgaaattaagttggattTCGGTAATGGCGACGATGAAGAAATATGTGATATTGAAAAGTCAATCGACGCCTGTACCAACATCAAAAGTTTGAATTTACAGCCCAAAGTTAAAACCACGAGACGGATTCAACGGAAAAATTACATACACACAAACGAATGGAACTACAAATGCGACATTTGCAGAAAATTATTCACGAGAATCACGAATCTTCTGAAACACATGAAAATCCATTCCGGCGAGGGAAACtggaaatgtgaaatttgtacGAAACGCTTCGCAACGAAGCAAGTCATGTTGACGCACAAGAAAATCCACTCCGACGCCAGGAAGtacaaatgcgagatttgcgCGAAGTGCTTCAGGACGAAAAAATACATGCTGGCGCACAAAAAAATCCACTCGGgcgaaagaaactacaaatgtgagaTTTGCACCAAACGTTTCACGACGAACCAATATCTGACGATACACGCGAAAACGCACAAAGACGAAacaaactacaaatgtgaaatttgcgctAAATGTTTCAAGACGAAACAATATCTGGTGATACACACGCAAACACACAACGACGAAAAAAGCTACGAATGCGAAATTTGCTCGAAATCCTTCACGAGGCAACAATATCTGATGACGCACGTAAAAATGCACGACGGACGAAAGTacgaatgcgaaatttgcacgaaatccTTCGCGACGAAACAATATCTGACGGCACATGTCAAAGCGCACAACGACGGACAAAAGtacaaatgcgaaatctgcGCGAAACACTTCAGCATGAAACAAGCCATGTTGATACACGAGAAAATCCACggcgaaaaaaaatacaaatgcgacgtttgcacGAAACGCTTCCACACAAAAAAATATCTCGGGACGCACGCGAAAACCCACACCGGCGAACGAAAACACAAGTGCGAGATTTGCGCCAAGTCCTTCGCGACGAAGAAATATCTGGCGACTCACGTGAAGAGGCACTGCGGCGACGGAAAATACAAATGTGAGATTTGCGCCAATTGTTTCACGATGAGGAAATATCTGTTGACGCACATGAAGGCGCACACCGGCGAACGAAACTACGAGTGCGAAGTTTGCACCAAATGTTTCGTGACGAAACGGTATATGACGAGACACATGAAATTGCACTCGGGCGAAAGAAGCTACGAATGTCGCGTTTGTTATAAAAGCTTCGCAACGAAGGGATATATGTTGAAGCACATGAAAAGACATAATTCATAA
Protein Sequence
METDVRDSNIPIVEVKPEPTTLTPKLEVCFAHFNDEIDRKNTVVIKEEERMDPSASITEIKLDSVGVAQNISNGITCNDIEIKLDFGNGDDEEICDIEKSIDACTNIKSLNLQPKVKTTRRIQRKNYIHTNEWNYKCDICRKLFTRITNLLKHMKIHSGEGNWKCEICTKRFATKQVMLTHKKIHSDARKYKCEICAKCFRTKKYMLAHKKIHSGERNYKCEICTKRFTTNQYLTIHAKTHKDETNYKCEICAKCFKTKQYLVIHTQTHNDEKSYECEICSKSFTRQQYLMTHVKMHDGRKYECEICTKSFATKQYLTAHVKAHNDGQKYKCEICAKHFSMKQAMLIHEKIHGEKKYKCDVCTKRFHTKKYLGTHAKTHTGERKHKCEICAKSFATKKYLATHVKRHCGDGKYKCEICANCFTMRKYLLTHMKAHTGERNYECEVCTKCFVTKRYMTRHMKLHSGERSYECRVCYKSFATKGYMLKHMKRHNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-