Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:13073914-13076030[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0048 0.34 12.5 1.3 1 23 135 157 135 157 0.98

2 15 0.0015 0.1 14.1 2.3 1 23 171 193 171 193 0.99

3 15 0.00043 0.03 15.8 8.8 1 23 199 221 199 221 0.98

4 15 0.00014 0.0099 17.3 7.0 1 23 227 249 227 249 0.99

5 15 0.00062 0.044 15.3 3.7 1 23 255 277 255 277 0.98

6 15 9.2e-06 0.00065 21.0 3.0 1 23 283 305 283 305 0.97

7 15 0.00068 0.048 15.1 2.6 1 23 311 333 311 333 0.97

8 15 4.7e-05 0.0033 18.8 2.1 1 23 339 361 339 361 0.98

9 15 9.9e-06 0.0007 20.9 0.5 1 23 367 389 367 389 0.99

10 15 0.00073 0.052 15.1 4.2 1 23 395 417 395 417 0.99

11 15 3e-05 0.0021 19.4 0.4 1 23 423 445 423 445 0.98

12 15 3.1e-05 0.0022 19.4 2.7 1 23 451 473 451 473 0.98

13 15 0.004 0.28 12.7 1.4 1 23 479 501 479 501 0.98

14 15 1.3e-06 9.2e-05 23.7 0.4 1 23 507 529 507 529 0.98

15 15 0.00072 0.051 15.1 7.5 1 23 535 557 535 557 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0048	0.34	12.5	1.3	1	23	135	157	135	157	0.98
2	15	0.0015	0.1	14.1	2.3	1	23	171	193	171	193	0.99
3	15	0.00043	0.03	15.8	8.8	1	23	199	221	199	221	0.98
4	15	0.00014	0.0099	17.3	7.0	1	23	227	249	227	249	0.99
5	15	0.00062	0.044	15.3	3.7	1	23	255	277	255	277	0.98
6	15	9.2e-06	0.00065	21.0	3.0	1	23	283	305	283	305	0.97
7	15	0.00068	0.048	15.1	2.6	1	23	311	333	311	333	0.97
8	15	4.7e-05	0.0033	18.8	2.1	1	23	339	361	339	361	0.98
9	15	9.9e-06	0.0007	20.9	0.5	1	23	367	389	367	389	0.99
10	15	0.00073	0.052	15.1	4.2	1	23	395	417	395	417	0.99
11	15	3e-05	0.0021	19.4	0.4	1	23	423	445	423	445	0.98
12	15	3.1e-05	0.0022	19.4	2.7	1	23	451	473	451	473	0.98
13	15	0.004	0.28	12.7	1.4	1	23	479	501	479	501	0.98
14	15	1.3e-06	9.2e-05	23.7	0.4	1	23	507	529	507	529	0.98
15	15	0.00072	0.051	15.1	7.5	1	23	535	557	535	557	0.98

Sequence Information

Coding Sequence: ATGGAGACTGATGTTAACGGTTCCGCAATAGTTGGAGTAAAAACTGAACCAATGGAGTGCCCAACCATATTACCAAAACTGGAAAACAACGACATAGACATTGACGAAGGGGCAGAATGGGGTGTTACAataaaggaagagaaatacgAAGATGCTTCAGTACCAGTGCCTGTGCTAACCGTTTCAAACGTACAAGTTGTATCAAACGATATCAAAATCGAGTTGGATCCCAGTGAAAATGatcaatcgattttttttagcaaaaaaGACCCAAACGAACAAGACCATGCAAACGAAAGTGGTGTCGAAGCTATCGACGCGGAAGAAagcttttttgatatttatgggAATTGTAACAGGAACGGAGATTTGAAACACCCGACAATATGTGAAAATGAAAGATATAAGTGCAAGATATGTTCCAAGCGTTTAAAAACGAAAGAAGTGGCGTTGAAACATATAAAATTGCACGGTGTTGGAAAAAAACGAGACGCACACACCGaacgaaattacaaatgtgagaTTTGCAACGAATCCTTCTTGGTGAAACGCGATTTTTCGAAACACCGCAGAAGACACGTCCccaaaagatattttaaatgtcaCATTTGCGAGAAATGTTTCACGACGAAACACTACATGCTGCAGCACGTCAAAGTGCACACCGGTAAGAGAGACTATAAATGCGAAGTTTGTCATCGATGCTTCGCGACGAAACAGTACATCTCGAAGCACATGAAGACGCACACCGGCGAACGCAATttcaaatgcgaaatttgcgacaaactCTTCAAAACGAAACATTACATGCTGCAGCACGCGACGACGCACATCGGGGAACGTAACTACGAATGCAAGACGTGCAACAAACGCTTTGCGACCAGAGATCATCTGGTGAGGCACTCGAGAGCGCACACGTCCGAGCGAAACCACGAGTGCGAAATTTGCATGAAGCGCTTCACCACGCGAACCGGTCTTTCGAAACACGTCAAGATGCACACCGGCGAGAAaaactacaaatgcgaaatttgcaataaacgcTTCGCGAAGAAACAGACTCTGTCGGAGCACACGAAACTGCACACCGACGAACGAAACTACAAATGCGACGTGTGCGACAAGCGCTTCGCCGTGAAGCAAAGCCTGGCGACACACGCAAAGACGCACACTCGCGAAAAGAACTTTAAATGTGAATTTTGCGTTAAGGAGTTCACGAGGAAGCAGTACATGATGCAGCACAGGAAAACGCACACGAACGAACGCaactacaaatgcgaaatttgcgagaAGAGCTTCGCGGCGAAGCAGACGCTTTCGAAACATGTTGCGACGCATTCGCGTgaacgtaattatgaatgtgaaatttgtaacaaatgcttCACGTCGAAGCAATATATGTTGCAGCACGTGAGAGCGCACACCGACGAGCGGAAGTTTATGTGTGAAATTTGCATGAAGCGTTTCCCGACGACACAACAGTTTTTGAATCACGTCAAGACGCACAATGGGGAAAGGAATTTCGTATGCGATATTTGCGCTAAGTCGTTCATTACGAAGAACAACTTGTTGACTCACATGAAAATTCACAGCCAAGAGGAAAGCCACAAATGTAatatttgcaagaaatgttTGTTTACGAAACGAGATTTGTTACAACACATGAAGACGCATGATGGCGATGTAAAGATAACATTTTTGGGGCCAGAGGAAAGCGACGACGAGTCTCTTCAAAATTTTCATAGGGTTCTACTGCCGAATGCGACAGATGAAAGTGACGAGATTGATAAAACGTTAATTAAAGAAGAGGTTGATGTGTTTCATGATACCGTGGAGGGAAAACCAGCAACTGCTTTGAATGAAAGTTATATCGGTACGGTTATTAAGGATGAGGCAACGGAATCTGTGGAAATTTTGAATTCATGGCAAACGCTCAAGAATGAGATTGTAATCAAGGAAGAACACGTTGATACCTCATGA
Protein Sequence: METDVNGSAIVGVKTEPMECPTILPKLENNDIDIDEGAEWGVTIKEEKYEDASVPVPVLTVSNVQVVSNDIKIELDPSENDQSIFFSKKDPNEQDHANESGVEAIDAEESFFDIYGNCNRNGDLKHPTICENERYKCKICSKRLKTKEVALKHIKLHGVGKKRDAHTERNYKCEICNESFLVKRDFSKHRRRHVPKRYFKCHICEKCFTTKHYMLQHVKVHTGKRDYKCEVCHRCFATKQYISKHMKTHTGERNFKCEICDKLFKTKHYMLQHATTHIGERNYECKTCNKRFATRDHLVRHSRAHTSERNHECEICMKRFTTRTGLSKHVKMHTGEKNYKCEICNKRFAKKQTLSEHTKLHTDERNYKCDVCDKRFAVKQSLATHAKTHTREKNFKCEFCVKEFTRKQYMMQHRKTHTNERNYKCEICEKSFAAKQTLSKHVATHSRERNYECEICNKCFTSKQYMLQHVRAHTDERKFMCEICMKRFPTTQQFLNHVKTHNGERNFVCDICAKSFITKNNLLTHMKIHSQEESHKCNICKKCLFTKRDLLQHMKTHDGDVKITFLGPEESDDESLQNFHRVLLPNATDESDEIDKTLIKEEVDVFHDTVEGKPATALNESYIGTVIKDEATESVEILNSWQTLKNEIVIKEEHVDTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -