Gspi029543.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390739.1:15603338-15610748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0042 0.29 12.7 0.7 1 23 39 61 39 61 0.94 2 16 9.6e-05 0.0068 17.8 1.1 2 23 67 89 66 89 0.93 3 16 9.2e-05 0.0065 17.9 0.3 1 23 93 115 93 115 0.97 4 16 0.00015 0.01 17.2 1.5 1 23 121 144 121 144 0.97 5 16 0.00049 0.034 15.6 3.6 1 23 149 171 149 171 0.98 6 16 6.1e-06 0.00043 21.6 0.2 1 23 177 200 177 200 0.98 7 16 7.7e-05 0.0054 18.1 0.1 1 23 205 227 205 227 0.98 8 16 7.2e-06 0.00051 21.4 2.4 1 23 233 255 233 255 0.98 9 16 1.2e-07 8.2e-06 27.0 4.6 1 23 261 283 261 283 0.98 10 16 0.0034 0.24 13.0 0.6 1 20 317 336 317 338 0.95 11 16 0.0038 0.27 12.8 5.9 1 23 344 366 344 366 0.97 12 16 0.65 46 5.8 1.1 1 21 533 553 533 554 0.95 13 16 0.059 4.1 9.1 0.1 2 23 561 583 561 583 0.95 14 16 0.014 1 11.0 1.5 3 23 589 609 588 609 0.97 15 16 0.0056 0.4 12.3 4.1 1 23 615 638 615 638 0.96 16 16 9.4e-06 0.00066 21.0 2.2 1 23 643 665 643 665 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTAGCTCGAAAATATCTAATTGCGTTCTTAAAAACATCCTAATTGAAACGTTACGCACATTAGGATCACCCGATACTAATTTCGAGATAGATAATTGGAAACTCCGATTTAAGTGCGACGTATGCTCGAAAGAATTCGAATCGTCGATTCGTTTGAAACAGCATTCCATTTTGCACGGCGATAAAACAATTCCGTGTGAAATATGTAACAGAAAATACAGAAATCAAGCCGATTTAAAGAAACATGTCACCGTATGTCACGGAAAACGATACACGTGCGAGTTGTGCGGAGCTGTGTTTGTTCATAAGATGTCGCTCACAGCGCACGAAGCTCGCCACCTAAATAAATACAGGTACGAATGCGATAAATGCGACAAAGGTTTTTATACAAGCACTGGATATCGAACGCACTACACCACAATCCACATGGGCATCTCATACGTCTGCGAAGTTTGCAACAAGAGTTTTATACACGAATGCAATTACAAGGAGCATGTAGAAAAGCACGAGAAAACCTTCGAGTACAAATGTCCGGAATGCGATAAGCTATACACCAGCAAGGGTGGCCTAAATGTGCACAGAAACACGGCCCATAAGAATTTGTTGTACGTTTGCGACGTTTGTGGAAAATCCGTTACTAGTCTCGCCAGCTGGAAGAGCCACAAGAGGATACACACTGGAGAAAAACCTTTTTCTTGTAATGTATGTGGAAAGTGCTTCACCGTAAGAAATTCACTAAGTAAACACTTAATTATGCATTCGAAACTTAGACCTTACTCTTGCACGGAATGTGACAAATGTTTTACGCAAAAGAGCACTCTCAACGTGCACATGAGGTATCACACGGGCAATCGGCCGTACCATTGCGGCATATCCTACAGTATAGTTTATATTTACAGATTTGACCTATTGGGGGCAGGCAGCGAATCCGATTCCGCAGGCTACGAATGTGAAGTATGTTCGcaaatattttcttccaaaaaGGATTTTCTAGCGCACCACGTAAAGGAAGGGGACGACAGTTTCATGTGTTGCAATTGCGACGCATCTTTTAAGACCACATCCGAACTTTTCCAGCACCACCAGTCGCACAAGTTCGAGCAGGTCATAATCGAACCGACTGACGTCGAATTCGGCGACTACACGGAACAAGTCGAGGCAGTTTTAAACATCCCGAGTGAGCCAATTGACACTACGAACGATTTGCTGTACATATTGGACGATTCGCAATGTGTCAACGAAATAGTAATCGAAGAAAGCGAAAGTCAGCAGAAAAACAACGCAAGCGCTAACACGCGACAGGAAAGTTTCGCGATAGTCCAAGTCGACCACGGTTATATGATTCCGAGCGTGTTTAAGGGACAACTGGGGCCTAAAAGGAGAAGCAAAAAGCGCGAGGTGCAAAACAGCGACAGCGATGATCCAGATTCGAATAATCTGTTGATGGAGATGCCGTCGACGAGTCGGAAAATTTATGGGGCTTCGCCCAAATCCCGATCTGCTCAGCTGAAGCGCCGGCACGAAGTCCCCGATTTTTCAGCGCCGAGTTACGTGATTTTGAATCCGAATGAAGATGTTAACATACTGCATTACAAATGCCTGCGCTGCGAGCAGCTGTTCATTAACAAGTTCGTTTTCTTTAGGCACATTGAAAAGGGTAAATGTTACGTAAATAGTTGTGACGTTTGTCCGGGCGTTTTCGAGAAGAACAGTGATTTCTATGAACATTACCTCGTCGAGCATACAGATCGTGCCATCTGCAACTTCTGTTTTCGAACGTTCATGTACGAGAAAAACGTCAAGGAGCACATGCTGAGGCACTTGGACCAGTTCAGGCATCGCTGCGAAGAATGCAATAAAGGTTTCTATACGGTGCGAGAGTATAGAAATCACTACAAAAACAGACATATGGGCATAAGACATAGGTGCGACGAATGTGGTAGGTCATTTGCTGATGAGTATTACTTTAAGAGACACACCGCTACGCATAGCAAACGTGCAGTTGATGCCCCAAACAATTGTTAA
- Protein Sequence
- MDFSSKISNCVLKNILIETLRTLGSPDTNFEIDNWKLRFKCDVCSKEFESSIRLKQHSILHGDKTIPCEICNRKYRNQADLKKHVTVCHGKRYTCELCGAVFVHKMSLTAHEARHLNKYRYECDKCDKGFYTSTGYRTHYTTIHMGISYVCEVCNKSFIHECNYKEHVEKHEKTFEYKCPECDKLYTSKGGLNVHRNTAHKNLLYVCDVCGKSVTSLASWKSHKRIHTGEKPFSCNVCGKCFTVRNSLSKHLIMHSKLRPYSCTECDKCFTQKSTLNVHMRYHTGNRPYHCGISYSIVYIYRFDLLGAGSESDSAGYECEVCSQIFSSKKDFLAHHVKEGDDSFMCCNCDASFKTTSELFQHHQSHKFEQVIIEPTDVEFGDYTEQVEAVLNIPSEPIDTTNDLLYILDDSQCVNEIVIEESESQQKNNASANTRQESFAIVQVDHGYMIPSVFKGQLGPKRRSKKREVQNSDSDDPDSNNLLMEMPSTSRKIYGASPKSRSAQLKRRHEVPDFSAPSYVILNPNEDVNILHYKCLRCEQLFINKFVFFRHIEKGKCYVNSCDVCPGVFEKNSDFYEHYLVEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTVREYRNHYKNRHMGIRHRCDECGRSFADEYYFKRHTATHSKRAVDAPNNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -