Gspi029505.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390739.1:15002043-15004201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00077 0.054 15.0 6.2 1 23 14 36 14 37 0.95 2 17 0.00041 0.029 15.9 3.8 1 23 43 65 43 65 0.96 3 17 3.2e-06 0.00022 22.5 2.1 1 23 71 93 71 93 0.99 4 17 0.0044 0.31 12.6 1.8 1 23 99 121 99 121 0.97 5 17 0.00042 0.029 15.8 1.9 2 23 128 149 127 149 0.97 6 17 7.9e-05 0.0055 18.1 3.3 1 23 155 177 155 177 0.97 7 17 0.001 0.073 14.6 9.2 1 23 183 205 183 205 0.98 8 17 0.0003 0.021 16.3 1.0 1 23 211 233 211 233 0.98 9 17 8.7e-05 0.0062 18.0 3.1 1 23 239 261 239 261 0.99 10 17 0.00054 0.038 15.5 4.9 1 23 267 289 267 289 0.98 11 17 0.0032 0.23 13.0 1.5 2 23 296 317 296 317 0.97 12 17 1e-05 0.00071 20.9 4.3 1 23 323 345 323 345 0.98 13 17 0.00027 0.019 16.4 4.0 1 23 350 372 350 372 0.98 14 17 2.3e-05 0.0017 19.8 1.5 1 23 378 400 378 400 0.98 15 17 0.0062 0.44 12.1 4.0 1 23 406 428 406 428 0.97 16 17 0.00028 0.019 16.4 7.4 1 23 434 456 434 456 0.98 17 17 0.0042 0.3 12.7 6.4 1 23 462 484 462 484 0.97
Sequence Information
- Coding Sequence
- ATGTTGGCTCACGTGAAATCGCACACCGAAGGAAGCAGTCACAAATGCACGAATTGCCTCAAGAGCTTCACAACGAGGAGCAGCATGGTGAGACACGTGAAACTGCACCACACCGTAGGAAACGAGCACCAATGCAAGGTTTGCTCGAAGAGTTTCAAATCCAAGTACTCCATGCTCACACACGCGCAATTGCACGCCGATGCAAGCAACTACAAGTGCGAGATATGCTCCAAGAGTTTCAAAGTAAGGGACTACATGTTGAGGCACATGAAGTCGCACGCGGAAGAAAATCGTCACGTGTGCAAGATTTGCTTCAAGAGTTTCATTTGGAAGAGAAACATGCTGGCGCACGTGCGGTCGCACTCCGACGGCTCCGATGTAAAATGCAAGATTTGCTCCAAAAGTTTTCAGTCGAAGTACGCCATGCTGTCGCACACTAAATCGCACGTCGAAGGAAGCGGCCACAAATGCACGATTTGCTCGAAAAGTTTCAAAACTAAGTATTACATGTTAGCGCACGTCGAATCCCACGCCAGAGGAAACGACCACAAATGCAAAACTTGCTCAAAGtgttttaaatcgaaatattcgATGCTGACCCACATGAAATTGCACACTAAGTTGAACAATTACAAATGCGACATTTGCTCGAAGAGTTTTAATTGGAGGTCTAGTATATCGCGACACATGGAATCGCACAACAcagtttataattataaatgcgaGGTCTGCTCCAAGAGTTTCAAATCGAGGAACTACATGTTGGTGCATCGAAAAAGGCACGCCGAAGGAAACAAGCACAAATGTAAGATGTGCCCGAAGAGTTTTATATTGAGGTGCAACATGTTGGCGCACATGAAATCGCACGCTGGAGAGAGCGATAACGTATGCAAGATTTGCACAAAAAGTTTCGTGTGGCGCAAAAACATGCTGAAGCACTTGAAATCACACACTGAACAAAACGATcacaaatgcgagatttgctCCAAGAAATTTAAACTGAAGGATTCGTTGTTGAGGCACATGAAATCGCACAATCAAGACGGCCACCAATGCAAGATTTGTTTTAAGAGCTTCCAACAGAAGTGGTATATGTTGGAGCATATGAACACGCACAACGAAGGGAATCGATACAAATGCAAGATTTGTTTCAAGGGTTTCAAGCAGAGGGCGAATATGATGAAGCACGTCGGAACACACACTAACGGGAATGATCACAAATGCATGATTTGTTCAAAGACGTTTAAACTTAGAAATTATATGTTGAGGCACTTGAAAGCGCACTCTAATGGATGTGATTACAACTGCAAGATTTGCTTCAAGAGTTTTAAACGGAGATGCCATATGGTGGCACACATGAAATCGCATTCTCAAAGACACGATCACACATGCAGAATTTGCTTGAAACAATTTAAGCATAGGCAACAATTATGGAAACACTGGAAATCTCATGCGGATAATATTAAGCTTGAAACTGAAGAAGAACCGAATGGATTTCAGGGAAACTTTGAAACGAAAGATTGTGGTGACGATGCTTTCTTAGATGGTTTGGTATTGGATATTCCTTGCGATACAAATAAAGCTAAAGTCGCAGTAAATTCGAGCGATGCCGACACATTCGTCGATGTGAAAACTGAAGCGACGGAAATTTTTGATTCCACGCAGTCACTTCAAACCGAAGAAAAAACTGCGAATCTTTTCAACGAATTCATCACGATTAAAAAAGAGGAACATAACGAAGTTGATGTAATAGTAAAACCTGAGATGCGAGTAAAAGAAGAAGCTTAA
- Protein Sequence
- MLAHVKSHTEGSSHKCTNCLKSFTTRSSMVRHVKLHHTVGNEHQCKVCSKSFKSKYSMLTHAQLHADASNYKCEICSKSFKVRDYMLRHMKSHAEENRHVCKICFKSFIWKRNMLAHVRSHSDGSDVKCKICSKSFQSKYAMLSHTKSHVEGSGHKCTICSKSFKTKYYMLAHVESHARGNDHKCKTCSKCFKSKYSMLTHMKLHTKLNNYKCDICSKSFNWRSSISRHMESHNTVYNYKCEVCSKSFKSRNYMLVHRKRHAEGNKHKCKMCPKSFILRCNMLAHMKSHAGESDNVCKICTKSFVWRKNMLKHLKSHTEQNDHKCEICSKKFKLKDSLLRHMKSHNQDGHQCKICFKSFQQKWYMLEHMNTHNEGNRYKCKICFKGFKQRANMMKHVGTHTNGNDHKCMICSKTFKLRNYMLRHLKAHSNGCDYNCKICFKSFKRRCHMVAHMKSHSQRHDHTCRICLKQFKHRQQLWKHWKSHADNIKLETEEEPNGFQGNFETKDCGDDAFLDGLVLDIPCDTNKAKVAVNSSDADTFVDVKTEATEIFDSTQSLQTEEKTANLFNEFITIKKEEHNEVDVIVKPEMRVKEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -