Gspi027477.2
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390738.1:38082050-38083189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0021 0.15 13.6 10.8 1 23 8 30 8 30 0.98 2 13 0.0012 0.082 14.4 3.5 1 23 36 58 36 58 0.98 3 13 2.9e-05 0.002 19.5 4.6 1 23 64 86 64 86 0.97 4 13 2e-05 0.0014 20.0 6.5 1 23 92 114 92 114 0.97 5 13 0.00058 0.041 15.4 2.9 1 23 120 142 120 142 0.96 6 13 1.5e-05 0.0011 20.3 1.9 1 23 148 170 148 170 0.98 7 13 0.0023 0.17 13.5 3.2 1 23 176 198 176 198 0.97 8 13 1.6e-05 0.0012 20.2 0.7 2 23 203 224 203 224 0.97 9 13 3e-07 2.1e-05 25.7 1.8 1 23 229 251 229 251 0.99 10 13 5.8e-05 0.0041 18.5 1.5 1 23 257 279 257 279 0.98 11 13 1.8e-07 1.3e-05 26.4 1.1 1 23 287 309 287 309 0.98 12 13 5.2e-05 0.0037 18.7 4.9 1 23 315 337 315 337 0.97 13 13 7.5e-06 0.00053 21.3 0.2 1 23 343 365 343 365 0.98
Sequence Information
- Coding Sequence
- ATGCACAAGCCCGGACGTTCACATAAATGCAAGTTATGCGCCAAACGATTCAAAACCAGAGACTGCATGCACAAGCACATGAGAACTCACACCGATGAGAAAAACCACACGTGCCAAATTTGCTCGAAGACCTACAAATGGCGACAATCTTTGACCGTGCACATGAAGTCACACACGGAGCAAAAAGACcacgaatgcgagatctgcacGAAGTGCTTCAAAACAAAATCGGGTTTGTCGTCGCACGTAAAACTGCACGCCAAGAAAAAGGCCCACAAATGCAAACGGTGCGGCAAGCGCTTCCGAACGAAGAACTACCTATTGAAACACATGACGCAACACACCGACGAAAAGAACCACGTGTGCGAGATATGCGCCAGGCGTTTCAAACGGAAGCACAACATGTTGGCGCACGCGAAGTTGCACGGCGAAGACTGCGATCACGAATGCGAAGTTTGCACGAAACGTTTCAAAACTGAGGCGTATTTGAACATCCACTTGAAATCGCACGATGAAACGAGGGACCACGTGTGCGAGAGTTGCGGCAtggatttcaaattaaagacgCACTTGTTGCAGCACGCGAAGACGCACAAGGAAAGCGAAGAGTGCGAGGTTTGCTCGCTGCGTTTCAGCACGAGGAAAAATTTGTTGGCGCACATGAAACTGCACGACGATGATAGTTACGAATGCGAGATTTGCAATAAATCGTTTAAAGCGAAGGATTATTTGTCGAAACATATGAAGAGGCACGTGAACGATGCCAGTTACGAATGTGCGACTTGTTTGAAGAAATTTAAGTCTAAGGAGACATTGTCGAAACACATTCAATTGCATGCGAATGCGAACGGTGACAGTTTccaatgtgaaatttgcgagaAGAGTTTTAAAACGCAAGCGAGTTTGTCGAAACACGTGAAAATGCACGATAACAAGGAGAGTCACAGTTGCCATGTATGTTCGAAGAGTTTCAAGGCGAAGTACAATATGTTGGCGCATATGAAAATGCATTCCGATGAGAAACCGTTCAAGTGTGATCAGTGTGGGATTGGTTTCATTCGTAAGGGTGATTTAGCAAGGCACAGTAAGGTACACGAAAGATTCTCCCAGGACAAAGTCTCATCTAATGCTAGACACTAG
- Protein Sequence
- MHKPGRSHKCKLCAKRFKTRDCMHKHMRTHTDEKNHTCQICSKTYKWRQSLTVHMKSHTEQKDHECEICTKCFKTKSGLSSHVKLHAKKKAHKCKRCGKRFRTKNYLLKHMTQHTDEKNHVCEICARRFKRKHNMLAHAKLHGEDCDHECEVCTKRFKTEAYLNIHLKSHDETRDHVCESCGMDFKLKTHLLQHAKTHKESEECEVCSLRFSTRKNLLAHMKLHDDDSYECEICNKSFKAKDYLSKHMKRHVNDASYECATCLKKFKSKETLSKHIQLHANANGDSFQCEICEKSFKTQASLSKHVKMHDNKESHSCHVCSKSFKAKYNMLAHMKMHSDEKPFKCDQCGIGFIRKGDLARHSKVHERFSQDKVSSNARH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -