Gspi032348.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:13556192-13558561[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.012 0.82 11.3 4.0 1 23 135 157 135 157 0.97
2 12 1.7e-05 0.0012 20.2 1.1 1 23 204 226 204 226 0.98
3 12 3.1e-07 2.2e-05 25.7 2.3 1 23 232 254 232 254 0.99
4 12 8e-05 0.0057 18.1 2.0 1 23 260 282 260 282 0.97
5 12 1.2e-06 8.2e-05 23.9 1.0 1 23 288 310 288 310 0.98
6 12 9.5e-07 6.7e-05 24.1 0.8 1 23 316 338 316 338 0.98
7 12 4.2e-06 0.00029 22.1 1.2 1 23 346 368 346 368 0.98
8 12 3e-05 0.0022 19.4 3.9 1 23 374 396 374 396 0.99
9 12 5.5e-07 3.9e-05 24.9 2.2 1 23 402 424 402 424 0.98
10 12 0.0002 0.014 16.8 3.2 1 23 429 451 429 451 0.98
11 12 6.4e-05 0.0045 18.4 6.7 1 23 467 489 467 489 0.99
12 12 4.8e-05 0.0034 18.8 3.7 1 23 495 517 495 517 0.99

Sequence Information

Coding Sequence
atggAGACTGATATAAAAGATTCCAAGTTTCCGATCACCGGTGTTAAAACTGAATTAATAGAACGTCCAAAGTTATTTCCAAAAGCGGAGCCTTGCTACGGATATTCCCATGTTGAAATCGACTGCAAAAAGGCTGAATGGGTTGTTGGTATAAAGGAAGAGAAATGTGAAGGTGCTTTGGTCCCGACGACCGCTTTAACAATCGACGCACATATTTCAAGCAACGAAATTGTGTTGAACGATACCGAAGTTAACGTCAAAGACGACGATGATGCATTGAATTTTATCAACAATAAGCCATGTAAACAAGGTAACGCAAGCAGCAAAACCGAGGCAGCAATAGACGTAATGACCGACAACAAATTACACGACGACAACATTCAAGATATTTACACCAAAAAATACAAGTGCAAAATTTGTTCCAGACATTTCAAAACAAGGAATGTTATATTGAAACACGTGAAGTTACACGCCgaggaaaaaatacaagaatttcaaaaagttaACAACGGTGACGTCGACAAATTATTCACAACAGAAGGAATTCTTTGGAATCACGTAGACGTGCACATCGACGGAGGTATGAAATGTGACAGCGGCGAACGAACTTATAAGTGTGAAATCTGCACGAAACCTTTTACGTCGAAACGAAGCATGCTGAGGCACGTGAAGGCCCACACCGACGAAAAgaactacaaatgtgaaatttgcgacaaatgcttcgCGACGAACCCGAACATGCTGCGACACATGAAATCGCACACCGGCGAGCGCAACCACCAGTGCGAGATTTGCAACAAGCGCTTCGCACGAAAGTACACGATGCTGGTGCACGTCGAGAGGCACGCCGACGAACAAaactataaatgtgaaatttgcaacaaatgcttcatcACGAAGATAAATTTAGCGGCGCACGTCAAGTGGCACACCAGAGAAAGGTGCTACGAATGCGAAGTCTGCGGCAAACGCTTCACGTCGAAGCAGCACCTCGCCGTGCACGCGAAAATACACTCGGACGACCGGGAACGAAATTACGAGTGCGGCAGCTGCGGAAAGCGCTTCACGACGAAGCAAGGAATGCTGCGGCACATGAAAATGCACACGGGCGAAAggaattacaaatgtgaaatttgcaataagtcGTTTATAGCGAAGCAGCATTTGTTGCATCACGTGCAAACGCACGCCGGCGGGCGGTGTTACGAATGTGAAATCTGCGGCAAGTGCTTCACGACAAACCAAAGTATGCTGCGGCACATGAAAGGGCACACCGACGAACGATACAATTGTGAAGTTTGTAGCAAACACTTCACGTTGAGGCAAAATATGTTGCGGCATATGAAAGTACACGGCGGTGAAGCCAAATATCGATCGGAACGCGTCAATGAAAAGaattacaaatgcaaacttTGCAATAAACGCACCTCGACAAAGCGATGTTTATTGCAGCATATGAGAACACACACCGGAGAAACAGACTACAAATGTGTAATTTGCACTGAACATTTTAGACAAAGAAAAACGTTGTTGGAACATATGAAAACACACGATGAAAAAATGAACGATAGGGCGCTTCAATATTTTCCGTGTTTTGTATCGACAATTGCAACGAAAGAAATCAAGGCTGATACATCGTTCATTAAGGAAGAGACTGGTGTGGCCCTAAATAACGATTATGATGATGCAGGAGGAAAACCATCAACAGCTGTGAATGAAAATCGTATTGGTACTGGAATTAAGGAAGAGGCGCTCCATAATGAGATTACAATCAAGGAAGAGCACATAATGGATTCCTCATTGTTTATGGACACGCACCTCTAA
Protein Sequence
METDIKDSKFPITGVKTELIERPKLFPKAEPCYGYSHVEIDCKKAEWVVGIKEEKCEGALVPTTALTIDAHISSNEIVLNDTEVNVKDDDDALNFINNKPCKQGNASSKTEAAIDVMTDNKLHDDNIQDIYTKKYKCKICSRHFKTRNVILKHVKLHAEEKIQEFQKVNNGDVDKLFTTEGILWNHVDVHIDGGMKCDSGERTYKCEICTKPFTSKRSMLRHVKAHTDEKNYKCEICDKCFATNPNMLRHMKSHTGERNHQCEICNKRFARKYTMLVHVERHADEQNYKCEICNKCFITKINLAAHVKWHTRERCYECEVCGKRFTSKQHLAVHAKIHSDDRERNYECGSCGKRFTTKQGMLRHMKMHTGERNYKCEICNKSFIAKQHLLHHVQTHAGGRCYECEICGKCFTTNQSMLRHMKGHTDERYNCEVCSKHFTLRQNMLRHMKVHGGEAKYRSERVNEKNYKCKLCNKRTSTKRCLLQHMRTHTGETDYKCVICTEHFRQRKTLLEHMKTHDEKMNDRALQYFPCFVSTIATKEIKADTSFIKEETGVALNNDYDDAGGKPSTAVNENRIGTGIKEEALHNEITIKEEHIMDSSLFMDTHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-