Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390739.1:14980204-14989287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0003 0.021 16.3 0.3 1 21 10 30 10 31 0.95

2 15 7.4e-06 0.00053 21.3 2.4 2 23 39 60 38 60 0.98

3 15 0.0021 0.15 13.6 4.0 1 23 66 88 66 88 0.99

4 15 8e-07 5.6e-05 24.4 2.1 1 23 94 116 94 116 0.98

5 15 2e-05 0.0014 19.9 3.5 1 23 122 144 122 144 0.99

6 15 0.012 0.86 11.2 6.4 1 23 149 171 149 171 0.99

7 15 1.4e-06 0.0001 23.6 4.0 1 23 177 199 177 199 0.98

8 15 1.1e-05 0.00074 20.9 3.4 1 23 205 227 205 227 0.99

9 15 6.8e-05 0.0048 18.3 0.6 1 23 233 255 233 255 0.99

10 15 7.6e-08 5.4e-06 27.6 3.6 1 23 261 283 261 283 0.98

11 15 1.2e-05 0.00083 20.7 2.0 1 23 289 311 289 311 0.99

12 15 0.015 1.1 10.9 0.6 1 23 389 411 389 411 0.92

13 15 0.0072 0.51 11.9 2.4 1 23 417 439 417 439 0.97

14 15 0.0088 0.62 11.7 0.1 1 23 443 465 443 465 0.98

15 15 0.52 36 6.1 0.2 1 9 471 479 471 481 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0003	0.021	16.3	0.3	1	21	10	30	10	31	0.95
2	15	7.4e-06	0.00053	21.3	2.4	2	23	39	60	38	60	0.98
3	15	0.0021	0.15	13.6	4.0	1	23	66	88	66	88	0.99
4	15	8e-07	5.6e-05	24.4	2.1	1	23	94	116	94	116	0.98
5	15	2e-05	0.0014	19.9	3.5	1	23	122	144	122	144	0.99
6	15	0.012	0.86	11.2	6.4	1	23	149	171	149	171	0.99
7	15	1.4e-06	0.0001	23.6	4.0	1	23	177	199	177	199	0.98
8	15	1.1e-05	0.00074	20.9	3.4	1	23	205	227	205	227	0.99
9	15	6.8e-05	0.0048	18.3	0.6	1	23	233	255	233	255	0.99
10	15	7.6e-08	5.4e-06	27.6	3.6	1	23	261	283	261	283	0.98
11	15	1.2e-05	0.00083	20.7	2.0	1	23	289	311	289	311	0.99
12	15	0.015	1.1	10.9	0.6	1	23	389	411	389	411	0.92
13	15	0.0072	0.51	11.9	2.4	1	23	417	439	417	439	0.97
14	15	0.0088	0.62	11.7	0.1	1	23	443	465	443	465	0.98
15	15	0.52	36	6.1	0.2	1	9	471	479	471	481	0.89

Sequence Information

Coding Sequence: ATGAAAAGACACACCAGCGAacgaaactacaaatgtgagaCTTGCAACAAAAGCTTCGCAATAAAAGAAGATTTGTCGGAGCACGTGAAACGGTACACCGGCGAAAGAAACAACAAATGTGACACTTGCAGCAAAAGCTTCTCGACCAAGCGATACCTCTTGGAACACATAAAGACGCACACCGGCGAGCAaaactacaaatgcgaaatttgcattAAATCCTTCACAACGAAACAATGCATGTTGCAACACGTGAAAACGCACAccgacgaaagaaattacacCTGCGACATTTGCAGTAAAACCTTCTCGCGAAAGACGTACCTCTTGAAACACGTGAAGATACACTCCGGCGAAAGgaactacaaatgtgaaatttgcagcaaacaCTTCTCGACGAAGGAAAACATGTCGGAGCACGTGAAGCGGCACGGCGAGAGCAACTACAAGTGCGAACTTTGCGACGCGTGCTTCACCACGAAGCACATCCGGTCGCGGCACATGAAAACGCACACTGGCGAACGCAAccacaagtgcgaaatttgcaccAGGAGCTTCAAAAGGAAAGACGAACTGTCGAACCACCTGAAgacgcacaccggcgagagGAACTACAGGTGCGAAGTTTGCGATAAGTGCTTCACGACGAAGCAGAGCATGTTGGAGCACGTGAAGACGCACGGcgacgaaagaaattacaaatgcgacgtCTGCAAGAAGGGATTCGCGTCGGACATGAGTCTGTCGAGACACGCGAAAACGCACACCAGGGCGAGGATCTACGAATGCGACATGTGCGGCAAATGCTTCACGACTAAAAGTTACCTGTCGAGACATCTGAAGATACACACCAATGAAAGGAACTACGAATGCAAAGTTTGTGCGAAATGTTTCATTGAAAAGGCGAAACTGTTGAGGCACATGCAAACACACGCTGAAGTAAGCAGTGAGGATGTCACGCTTTGCAAATTTTCGTATAATGTACCAACACCGACATCTGGAGGGATTAGCGAGATTGAAACACGATTTATGAAGGAAGAGACGCCTTCATTCGTAAAGAAAGAGAAGTTGGAGATTGACGATGAGCTTCATGTGGAGGCGCGATCTGCCCCACGAGTGCAAAATCGCGATAGGAACGCCGCGAAGCCGAAACACGTCGGCGGTTACGACTGCGAGATCTGCGGAAAAAAATTCGAGTGGAGGTGCGACATGGCGAGACACGCGATTTCGCACACCAAACGAAAAGATcacaaatgcgagatttgctCCGCGAGTTTTATGCAGACGAATAGTCTGGCGCACCACGTAAGCTCGCACGCTAAAGTCTACGAATGCGAGATTTGCGCGAAGAGCGTGCAAGGGAAGCAAAACATGTTAACGCACATGGAATCTCACGCCGAAGTGACGATTTACACGTGCCCGATTTGCGGAAGGAAGGTCGTTTAG
Protein Sequence: MKRHTSERNYKCETCNKSFAIKEDLSEHVKRYTGERNNKCDTCSKSFSTKRYLLEHIKTHTGEQNYKCEICIKSFTTKQCMLQHVKTHTDERNYTCDICSKTFSRKTYLLKHVKIHSGERNYKCEICSKHFSTKENMSEHVKRHGESNYKCELCDACFTTKHIRSRHMKTHTGERNHKCEICTRSFKRKDELSNHLKTHTGERNYRCEVCDKCFTTKQSMLEHVKTHGDERNYKCDVCKKGFASDMSLSRHAKTHTRARIYECDMCGKCFTTKSYLSRHLKIHTNERNYECKVCAKCFIEKAKLLRHMQTHAEVSSEDVTLCKFSYNVPTPTSGGISEIETRFMKEETPSFVKKEKLEIDDELHVEARSAPRVQNRDRNAAKPKHVGGYDCEICGKKFEWRCDMARHAISHTKRKDHKCEICSASFMQTNSLAHHVSSHAKVYECEICAKSVQGKQNMLTHMESHAEVTIYTCPICGRKVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -