Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390739.1:7239999-7241813[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0032 0.23 13.0 3.4 2 20 105 123 104 126 0.93

2 17 0.00053 0.037 15.5 6.9 1 23 132 154 132 154 0.98

3 17 2.3e-06 0.00016 22.9 0.7 1 23 160 182 160 182 0.99

4 17 5.6e-05 0.004 18.6 5.1 1 23 188 210 188 210 0.98

5 17 0.0013 0.093 14.2 3.7 1 21 216 236 216 238 0.96

6 17 0.0035 0.25 12.9 3.1 1 21 257 277 257 279 0.93

7 17 0.0086 0.61 11.7 2.2 1 23 285 307 285 307 0.95

8 17 0.0021 0.15 13.6 3.8 2 23 315 336 314 336 0.97

9 17 0.054 3.8 9.2 1.8 1 23 342 364 342 364 0.98

10 17 2e-05 0.0014 20.0 1.3 1 23 369 391 369 391 0.98

11 17 0.0062 0.44 12.1 3.6 1 20 396 415 396 418 0.92

12 17 4.4e-06 0.00031 22.0 3.8 1 23 424 446 424 446 0.98

13 17 3.1e-06 0.00022 22.5 2.3 1 23 452 474 452 474 0.98

14 17 0.0026 0.18 13.3 4.1 1 21 480 500 480 502 0.95

15 17 1.7e-06 0.00012 23.3 1.6 1 23 508 530 508 530 0.99

16 17 0.00059 0.041 15.4 1.8 1 23 536 558 536 558 0.98

17 17 9.8e-06 0.00069 20.9 3.7 2 23 565 586 564 586 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0032	0.23	13.0	3.4	2	20	105	123	104	126	0.93
2	17	0.00053	0.037	15.5	6.9	1	23	132	154	132	154	0.98
3	17	2.3e-06	0.00016	22.9	0.7	1	23	160	182	160	182	0.99
4	17	5.6e-05	0.004	18.6	5.1	1	23	188	210	188	210	0.98
5	17	0.0013	0.093	14.2	3.7	1	21	216	236	216	238	0.96
6	17	0.0035	0.25	12.9	3.1	1	21	257	277	257	279	0.93
7	17	0.0086	0.61	11.7	2.2	1	23	285	307	285	307	0.95
8	17	0.0021	0.15	13.6	3.8	2	23	315	336	314	336	0.97
9	17	0.054	3.8	9.2	1.8	1	23	342	364	342	364	0.98
10	17	2e-05	0.0014	20.0	1.3	1	23	369	391	369	391	0.98
11	17	0.0062	0.44	12.1	3.6	1	20	396	415	396	418	0.92
12	17	4.4e-06	0.00031	22.0	3.8	1	23	424	446	424	446	0.98
13	17	3.1e-06	0.00022	22.5	2.3	1	23	452	474	452	474	0.98
14	17	0.0026	0.18	13.3	4.1	1	21	480	500	480	502	0.95
15	17	1.7e-06	0.00012	23.3	1.6	1	23	508	530	508	530	0.99
16	17	0.00059	0.041	15.4	1.8	1	23	536	558	536	558	0.98
17	17	9.8e-06	0.00069	20.9	3.7	2	23	565	586	564	586	0.98

Sequence Information

Coding Sequence: ATGGAGGACAATTCTGCGAACAGTCTCAATTCGATATTTCTTAAAGTGAAACCAGAATCAAGTGATGCTTTCTATTCAGAATGTTCAAGTGCCGAGAGTGGAAGTTTGACAGTCGGAGAATTCAAATATGAACCGTTGTCTCCCGACGACAAAATTATGGTAAAATACGAAAGTATGGTTTCTGATCCATCGGTGGAAAACGCCTTGGCAAAGATAAAcattaaaacagaattaaaaataaccatTTCGCAGAATCTCATTAAAAGCACCGACAACAAACCGATGAAAACTCACAAGAACGCGACACATCTCAAATGCGATGTCTGCTCGAAGAGCTTCAAAACGAGAAGGACTTTGGTGAATCACAAAATATGCCACAGCGACGAGAGAAACCACAAATGCAACATTTGCACTAAGAGCTTCAAAATGCGAACGTATTTGTTAGAACACATGAAACATCACAGAGACGAAAGGaattacaaatgcgaagtttgcgTCAAGAGCTTCAATACGAAGGGGACTCTGGTGGAGCACATGAAAAGCCACACCGACGAAAGAAACCACAAATGCAACGTATGCACCAAGAGTTTTAAAATGCGTCGAACACTGATGATACACATGAAACGTCACGGCGACAAACGGAATTACAAATGCGATATTTGCAGCAAAAGTTTTATATCGCGATACAGGGTGGTGAAGCACATGCGGTGTCACAGTGATGAGAGGCATCGTATATACGAGGATTTAAAAGCGATCGACGAAAGAAGTTACACGTGCGATATTTGCACGAAAAGTTTCAAAAGTAGAAACAGCATGGTGATGCACGTGAAATGCCACAGCGACGAGAGGAATCACAAATGCGACTTTTGCGGCAAAAGCTTCAAATGGAAGGGCACGATGCTGGAGCACGCGAAGTCGCACACCGCCGAGAACAGTTGCAAGAAATGTGAGATTTgctcgaaaaattttaaaaccaaaaaaacTTTGTTGTTTCACATGAAATCGCATTCTGGTGACGACAGTTACAAATGTGATGTTTGCCTCAGTAGCTTTCACGCTAGAGATAGTTTACTGGAGCACATGAAATTTCACGACGAGAGAAATCACAAATGCGATGTTTGCGGCGAGAGTTTCAAAATGAGAGATGAAATAACGATACACATGAAACGACACAGTGAAAGGAATTACCAGTGCGATATTTGTACCAAGAGTTTCACGACGAGAGACATTTTAGTGAAGCACTTCAAGTGTCACAGCGaggaaagaaatcacaaatgcgaTGTTTGCACTAAGTCCTTCAAAACCCAAAAATATTTGGTGGTACACATGCAACGTCACACTAacgaaagaaatcacaaatgcgaTATTTGCACGAAGGGTTTTAATACGAGAGGAAATTTACTGGACCACATGAAACGTCACACTAACGAAAGAAATTACTACTGCAAGGTTTGCACTAAGAGTTTTAAAACGCGGGACGCAACGATGATCCACATGAAATGTCACACtgacgaaagaaattacaaatgtgataTTTGCGCCAAGAGTTTTAAAACGAGGAGCTATATGGTGGAGCACATGAAGACTCATAGTGATGAGAGAAATCACAAATGCGATATTTGCACTAAAACGTTCAAGTGGAGAAGTGCAATGCTCGCACATATGAAACTGCACACTTTAGGCAATAATCAAAAGTGTGAGATTTGCTCGAAGAGTTTCAAGACCTGTAGTACTTTGTTATCTCACATGGAGACTCACTCTGATGAAAGAAGGTACGAGTGTAAAACTACAGATGAAAAAAGAGAAACCTTTTAA
Protein Sequence: MEDNSANSLNSIFLKVKPESSDAFYSECSSAESGSLTVGEFKYEPLSPDDKIMVKYESMVSDPSVENALAKINIKTELKITISQNLIKSTDNKPMKTHKNATHLKCDVCSKSFKTRRTLVNHKICHSDERNHKCNICTKSFKMRTYLLEHMKHHRDERNYKCEVCVKSFNTKGTLVEHMKSHTDERNHKCNVCTKSFKMRRTLMIHMKRHGDKRNYKCDICSKSFISRYRVVKHMRCHSDERHRIYEDLKAIDERSYTCDICTKSFKSRNSMVMHVKCHSDERNHKCDFCGKSFKWKGTMLEHAKSHTAENSCKKCEICSKNFKTKKTLLFHMKSHSGDDSYKCDVCLSSFHARDSLLEHMKFHDERNHKCDVCGESFKMRDEITIHMKRHSERNYQCDICTKSFTTRDILVKHFKCHSEERNHKCDVCTKSFKTQKYLVVHMQRHTNERNHKCDICTKGFNTRGNLLDHMKRHTNERNYYCKVCTKSFKTRDATMIHMKCHTDERNYKCDICAKSFKTRSYMVEHMKTHSDERNHKCDICTKTFKWRSAMLAHMKLHTLGNNQKCEICSKSFKTCSTLLSHMETHSDERRYECKTTDEKRETF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -