Gspi023900.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390737.1:32790296-32793137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00015 0.011 17.2 0.1 2 23 178 200 178 200 0.96 2 14 0.00028 0.02 16.4 0.2 2 23 218 239 217 239 0.97 3 14 0.0066 0.47 12.0 2.1 1 23 245 267 245 267 0.98 4 14 1.1e-05 0.00078 20.8 1.5 1 23 275 297 275 297 0.98 5 14 1e-07 7e-06 27.2 0.5 1 23 302 324 302 324 0.97 6 14 0.039 2.7 9.6 4.6 1 23 330 352 330 352 0.97 7 14 1.1e-05 0.00077 20.8 0.4 1 23 358 380 358 380 0.97 8 14 0.00032 0.023 16.2 1.3 1 23 386 408 386 408 0.97 9 14 0.00012 0.0082 17.6 4.4 3 23 416 436 415 436 0.98 10 14 1.4e-07 9.8e-06 26.8 0.2 2 23 442 463 441 463 0.98 11 14 8.1e-05 0.0057 18.1 1.0 1 23 469 491 469 491 0.97 12 14 0.0008 0.057 14.9 0.2 1 23 497 519 497 519 0.98 13 14 4.2e-08 2.9e-06 28.4 0.9 1 23 525 547 525 547 0.99 14 14 0.015 1.1 10.9 0.1 1 20 553 572 553 574 0.93
Sequence Information
- Coding Sequence
- ATGTGTAGGGTATGCATGTCAGTCACAACCGGAAACCAAATGTCCATATTCATCGGCGATTCGAACGTATGCGGAAAAATAATGGCAATATCCAACGTGCAGATCATCTACGAAGACGACTTGCCCCAAATCGTTTGTACCGATTGCGCCGGTCGCATAGACGACGCTTACCTGCTGAAGTTAAAGTGCGAGGAAACCGACTTGGTGCTGCGAAGGTACTTATCGACAGACTTACAAAACAAAAGCCCAAGTAATTGTGTTTATTCAGTCGTCGCGCCCGCAGACGACTACGTTGACGACACAACCACGTTCATTGAAAATCTCACCCCAATCGAGACCGAACATAAACCGAAGTACGAATGCAAACATTGCAAGAACGTTTATGAATGTGGCCGGGAGTTTATGAACCATGTCGAAACGCACAAGCCAGCACAACAGATGAAGAATTGCGAAAGCACCGTTGACGAAActcatttaaatcaaattggGTCGTCAAAAAAGAGCAAGAAATCAAGCAGTAAAAAAGTTCGAGTGTGCAGCGTGTGTGACCAGAAATTCCAATCAAATGAGCAGTTAATATCGCACATGTTGGTCGAACACACAGAAGTGGGACtcaatgaaaatgaagaacGCAAAACCGACGTCCAACTGACGTGTAACGTCTGCAACAAGACGTACTTGAAGGCGAGCAACTTGGCCGCTCACATGGGCACGCACACCGACAACAAGCCCTTCGAGTGCAAATTCTGCGGGAGGAAATTCGCGCAGGGTCGAGCGCACGCCAGTCACATGCGGACCCATTTGAATTTGATCGAGAAACCTCATCAGTGCAAAATTTGCAGTAAATCGTATGCCGAAGAAGAGCAATTGAACGCGCACATGAAGAAACACTCGCTCCAACCGTTCATCTGCACGGTGTGCGGGAAAAGCGTCTCAAGTTCCAGCAATCTCAAGTCGCATATGAGACTGCACACCGGGGACAAGCCTTATGCGTGTCACATTTGTGATGAAAAATTCGCCCAGAGCAACACGCACAGCTATCACATGAAGAAGCATCTGGGCGAGAGACCGTTTGCATGTGAGTTGTGCTCGAAGGCATTCACCACCAACGGCCAGCTCGTGAACCATCGCAGGCTGCACACCGGTGAAAGACCTTTCGCTTGTAACGTCTGTCCAAAGCGGTTCACTCAGAAGGTCGCTCACAAGGTGCACATGATGATGCACACTGGGAACAAACCACTTTTATGCAGCATTTGCGGGAAGAAATACTCTCAAAATTGTCACTTGGTGCAACATATGAAGCTGCATGCTGgTGAGACGCAACAGTGCAGCATCTGCGGGAAGGGCTACTCGACGAGCGGCAATCTCGCCGCTCACATGAAAACACACACCGGCATCAAGCCGCACGTCTGCGGCATCTGCAACAAAGGGTTCTACGTGATGAACAAGCTCGAGAAGCACATGCGGATACACACGGGTGAGAAACCTTACAGCTGTTCGGTCTGTCTGAAACGGTTTGCAAGCATCGACAACGTTAAAGTTCACGAACGCATTCACACGGGTGAGCGACCGTACAGATGTCAGGTGTGCCCGAAGGATTTCACGAACAATTCGCAACTCACCGTCCATATGCGGTCGCACACCGGACAAAAACCATACGTTTGCAAGGTGTGTTTGAAGGGTTACACAACCGCGTACGGTCTGTCTGTGCATTCGAACAAGTGCTCAAATGGGGTGAAGACGTAA
- Protein Sequence
- MCRVCMSVTTGNQMSIFIGDSNVCGKIMAISNVQIIYEDDLPQIVCTDCAGRIDDAYLLKLKCEETDLVLRRYLSTDLQNKSPSNCVYSVVAPADDYVDDTTTFIENLTPIETEHKPKYECKHCKNVYECGREFMNHVETHKPAQQMKNCESTVDETHLNQIGSSKKSKKSSSKKVRVCSVCDQKFQSNEQLISHMLVEHTEVGLNENEERKTDVQLTCNVCNKTYLKASNLAAHMGTHTDNKPFECKFCGRKFAQGRAHASHMRTHLNLIEKPHQCKICSKSYAEEEQLNAHMKKHSLQPFICTVCGKSVSSSSNLKSHMRLHTGDKPYACHICDEKFAQSNTHSYHMKKHLGERPFACELCSKAFTTNGQLVNHRRLHTGERPFACNVCPKRFTQKVAHKVHMMMHTGNKPLLCSICGKKYSQNCHLVQHMKLHAGETQQCSICGKGYSTSGNLAAHMKTHTGIKPHVCGICNKGFYVMNKLEKHMRIHTGEKPYSCSVCLKRFASIDNVKVHERIHTGERPYRCQVCPKDFTNNSQLTVHMRSHTGQKPYVCKVCLKGYTTAYGLSVHSNKCSNGVKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -