Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:13047634-13049709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.8e-05 0.002 19.5 6.1 1 23 160 182 160 182 0.98

2 17 2.8e-05 0.002 19.5 3.3 1 23 187 209 187 209 0.99

3 17 0.0034 0.24 13.0 2.4 1 23 215 237 215 237 0.97

4 17 0.0026 0.18 13.3 0.9 1 23 250 272 250 272 0.96

5 17 0.00031 0.022 16.2 7.1 1 23 278 300 278 300 0.98

6 17 0.0017 0.12 13.9 6.8 1 23 306 328 306 328 0.98

7 17 0.0006 0.042 15.3 3.5 1 23 334 356 334 356 0.97

8 17 3.2e-06 0.00023 22.5 1.3 1 23 362 384 362 384 0.98

9 17 0.00047 0.033 15.7 2.8 1 23 390 412 390 412 0.98

10 17 0.00049 0.035 15.6 2.0 1 23 417 439 417 439 0.98

11 17 1e-05 0.00071 20.9 1.2 2 23 445 466 444 466 0.97

12 17 2.6e-06 0.00018 22.8 1.1 1 23 472 494 472 494 0.99

13 17 0.00025 0.018 16.5 4.9 1 23 500 522 500 522 0.99

14 17 2e-05 0.0014 20.0 1.4 1 23 528 550 528 550 0.99

15 17 0.0016 0.11 14.0 0.4 1 23 554 577 554 577 0.98

16 17 7.9e-05 0.0056 18.1 7.1 1 23 579 601 579 601 0.98

17 17 0.0012 0.083 14.4 2.6 1 23 607 629 607 629 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.8e-05	0.002	19.5	6.1	1	23	160	182	160	182	0.98
2	17	2.8e-05	0.002	19.5	3.3	1	23	187	209	187	209	0.99
3	17	0.0034	0.24	13.0	2.4	1	23	215	237	215	237	0.97
4	17	0.0026	0.18	13.3	0.9	1	23	250	272	250	272	0.96
5	17	0.00031	0.022	16.2	7.1	1	23	278	300	278	300	0.98
6	17	0.0017	0.12	13.9	6.8	1	23	306	328	306	328	0.98
7	17	0.0006	0.042	15.3	3.5	1	23	334	356	334	356	0.97
8	17	3.2e-06	0.00023	22.5	1.3	1	23	362	384	362	384	0.98
9	17	0.00047	0.033	15.7	2.8	1	23	390	412	390	412	0.98
10	17	0.00049	0.035	15.6	2.0	1	23	417	439	417	439	0.98
11	17	1e-05	0.00071	20.9	1.2	2	23	445	466	444	466	0.97
12	17	2.6e-06	0.00018	22.8	1.1	1	23	472	494	472	494	0.99
13	17	0.00025	0.018	16.5	4.9	1	23	500	522	500	522	0.99
14	17	2e-05	0.0014	20.0	1.4	1	23	528	550	528	550	0.99
15	17	0.0016	0.11	14.0	0.4	1	23	554	577	554	577	0.98
16	17	7.9e-05	0.0056	18.1	7.1	1	23	579	601	579	601	0.98
17	17	0.0012	0.083	14.4	2.6	1	23	607	629	607	629	0.99

Sequence Information

Coding Sequence: ATGGAGGCTGAATTGGATTTTAACTGCATGATTGTTGATGTCAAACCTGAACCAACAGAACTTCTGAACCTGATCCCGAAACTGCGGTACAATGGATATTCTCACAATGAAATCGACCACAAAATACCCGATGCTTTAGCTATAAAAGAAGAACTCGTCGAAATAAAACTCGACACAAACGATGTTGAAATTAAGTTGAATTTCGTCGATGGCAATGAATCAGTGCAGTTTTCTCGTCGTGACATGTGGATGCAAGACAAAGCAAGTAAATGTGATGTACTGTCATcaaatgaatgtaaaattaGCAAAGAATCAGTATCAACGCAAAGCAAACGAAGCTGCGACGTTTACAAGAATCGTGCAACCGGTAATTTGAAAAACGCGAGACACAACGAAAAATGCAAGTGCAAAATTTGTTTCAGGCGCCTCAAATCGCGAAAAATTCGCCAGGGCAAAACATTACTCAGCCGAAAGagttacaaatgtgaaatttgcgacaaatgctACACGACATGCGAATACATGCAGCGGCACATGAAAGCGCACACTGAGGagaattacaaatgcgaaatttgcgagCGGTGCTTCGTAACGAACCAACACTTGGTGACACACGTCGAAACTCACGCCAAAGAACGGAGGTTCAAATGCGAATTTTGCGACAACCGCTTCACATCCAGGCTCGGTTTGAGGAGACATTCGAAGGAACACGCCGCCGGCGCAAAACCGCACGCCCTCAAAGCAAAGTACAAATGCGAAATGTGCCCCAAGCGGTACACGACGAAACTTTACATGTTGGAACACGCGGAAAAACACACCGGCGAACGCAACTACAAGTGTCAcgtttgcaacaaatgtttcACGACGAAACGCTACATGTTGCAGCACGTGAAAGCACACACGCGACAAACGAaccataaatgtgaaatttgcaacaaatcctTCGCGACGAAGCAGTGCAAGTCACTGCACATGCGAAGACACACCGGTGAGAAAAACTacgaatgcgaaatttgcaagaaaCGCTTCACGACGAAGCAATGCATGTTGCAACATGTGAAAGGACACAGTGGAGAGAAGAACTATAAATGCGGAACTTGCGGCACGAGCTTCGTTCGAAACGAACATCTTTTGAGACACGTGAAGGCGCACACCACCGACAAGAACTTCAAATGCGAAATCTGCGGCAAGTGTTTTGCGACGGAACGTTACAAGCTGGAGCACGTGAAGCGACACACCACGACGGATtttaaatgcgagatctgcgacAAATTCCTCTCGACGAAGCAGTGCTTGTTGGAGCACGTCAGGGCACACTCCGGCGAAAAAgtcaagtgcgaaatttgcgacaaacgcTTCACGACGAACCAAACTATGCTGCGGCATTTGAAAATACACACCGACGAAACTAATTATAAATGCGAAATCTGCGGTAAGAGCTTCGCGACAAAGCGTTATATGTCGGTGCACGTGAAACGACACGCCAGGGAGACGAATTATAAATGCAAGGTGTGCGACAAGCGGTTCACGACGAAACAGTGCGTGCTGCAGCATGCGAAGACGCACACCCGCGAAAGGAATTACAAATGTGGGATATGCGGGAAGGGGTTTTTAAGGAAGGAGCACCTTTCGCGCCACGTCAAAATACACGATAAAAGTTTTAAATGCGAAAGTTGCGTCAAGTATTTCGCGACGGAAGAGCTGCTGTTGAATCACGTGCGAAAGGTTCACACCCACGAGTGCaaagtttgcaagaaatgcaCCTCGACCAAACGAAATTTAATGCTGCACATGAAAACGCACGCTGTAACAAGTaactataaatgtaaaatttgcgatGGTCATTTCAAAGAAAGGAAAATGTTATTGGAACACGTGAAAACGCATATTGAGGACAGCATGGAAGAGTCTTATCGAAATTTTCCTTATATTGCATCAACAATTACAACAGAAGAAATCAACAATAAACTCTTGGTTAAGGAAGAGATTAGTACGTTCCTAAAGAAGGACGAGATGGAGGACAAGAATGGTAAGGATTTCATGTTCAATTTCACTTATGCTCATTGCCTAATATAA
Protein Sequence: MEAELDFNCMIVDVKPEPTELLNLIPKLRYNGYSHNEIDHKIPDALAIKEELVEIKLDTNDVEIKLNFVDGNESVQFSRRDMWMQDKASKCDVLSSNECKISKESVSTQSKRSCDVYKNRATGNLKNARHNEKCKCKICFRRLKSRKIRQGKTLLSRKSYKCEICDKCYTTCEYMQRHMKAHTEENYKCEICERCFVTNQHLVTHVETHAKERRFKCEFCDNRFTSRLGLRRHSKEHAAGAKPHALKAKYKCEMCPKRYTTKLYMLEHAEKHTGERNYKCHVCNKCFTTKRYMLQHVKAHTRQTNHKCEICNKSFATKQCKSLHMRRHTGEKNYECEICKKRFTTKQCMLQHVKGHSGEKNYKCGTCGTSFVRNEHLLRHVKAHTTDKNFKCEICGKCFATERYKLEHVKRHTTTDFKCEICDKFLSTKQCLLEHVRAHSGEKVKCEICDKRFTTNQTMLRHLKIHTDETNYKCEICGKSFATKRYMSVHVKRHARETNYKCKVCDKRFTTKQCVLQHAKTHTRERNYKCGICGKGFLRKEHLSRHVKIHDKSFKCESCVKYFATEELLLNHVRKVHTHECKVCKKCTSTKRNLMLHMKTHAVTSNYKCKICDGHFKERKMLLEHVKTHIEDSMEESYRNFPYIASTITTEEINNKLLVKEEISTFLKKDEMEDKNGKDFMFNFTYAHCLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -