Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:3876041-3877645[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-05 0.0014 20.0 4.5 1 23 118 140 118 140 0.99

2 15 5.4e-06 0.00038 21.8 2.8 1 23 145 167 145 167 0.99

3 15 4.4e-07 3.1e-05 25.2 3.7 1 23 173 195 173 195 0.99

4 15 3.8e-05 0.0027 19.1 2.2 1 23 201 223 201 223 0.97

5 15 1.6e-05 0.0011 20.3 4.5 1 23 229 251 229 251 0.99

6 15 0.00055 0.039 15.4 4.2 1 23 257 279 257 279 0.99

7 15 9e-06 0.00064 21.1 0.8 1 23 285 307 285 307 0.98

8 15 3.8e-05 0.0027 19.1 0.5 1 23 313 335 313 335 0.98

9 15 0.018 1.3 10.7 1.4 1 23 339 361 339 361 0.97

10 15 0.00011 0.0075 17.7 2.4 1 23 367 389 367 389 0.98

11 15 0.00011 0.0076 17.7 7.2 2 23 394 415 393 415 0.97

12 15 0.004 0.28 12.7 2.1 1 23 421 443 421 443 0.88

13 15 3.5e-06 0.00025 22.3 6.3 1 23 449 471 449 471 0.99

14 15 1.4e-06 0.0001 23.6 1.4 1 23 477 499 477 499 0.97

15 15 0.015 1.1 10.9 6.5 1 23 505 527 505 527 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-05	0.0014	20.0	4.5	1	23	118	140	118	140	0.99
2	15	5.4e-06	0.00038	21.8	2.8	1	23	145	167	145	167	0.99
3	15	4.4e-07	3.1e-05	25.2	3.7	1	23	173	195	173	195	0.99
4	15	3.8e-05	0.0027	19.1	2.2	1	23	201	223	201	223	0.97
5	15	1.6e-05	0.0011	20.3	4.5	1	23	229	251	229	251	0.99
6	15	0.00055	0.039	15.4	4.2	1	23	257	279	257	279	0.99
7	15	9e-06	0.00064	21.1	0.8	1	23	285	307	285	307	0.98
8	15	3.8e-05	0.0027	19.1	0.5	1	23	313	335	313	335	0.98
9	15	0.018	1.3	10.7	1.4	1	23	339	361	339	361	0.97
10	15	0.00011	0.0075	17.7	2.4	1	23	367	389	367	389	0.98
11	15	0.00011	0.0076	17.7	7.2	2	23	394	415	393	415	0.97
12	15	0.004	0.28	12.7	2.1	1	23	421	443	421	443	0.88
13	15	3.5e-06	0.00025	22.3	6.3	1	23	449	471	449	471	0.99
14	15	1.4e-06	0.0001	23.6	1.4	1	23	477	499	477	499	0.97
15	15	0.015	1.1	10.9	6.5	1	23	505	527	505	527	0.99

Sequence Information

Coding Sequence: ATGGAGATTGATGTAAAAGATTTCAAATTGGTCGTCGAAGTAAAATCTGAAACGGTGGAATGTACAACTTTATTCCCAAAACTACAGCCCTGCGTATATTCATATCCTACTGATGTTGACCACGACGAAATGAAATGTGTCCCTACCGTGACGGAAGAGAAATACGAAGTTTCATGCGCTGGAATTGCAGCCAACGACATAAGAATCAAGTTGGATCTTGGTGACGACGATGACGATCCGTTGATCTCCGAAACGAGAAAAGACGCATTGGAAGAATTACACacacaagaagaaattaaagaTCCCACCgtttttcaaagaaaagatGTTATGTGCCTCGACGAAGGAAGCTACGAATGTGACGTTTGCACGAAATCGTTCTCGACCAAGGAATGTTTTAAGAGCCACGTGAAAACGCACGTCAAAATTAAGTACAAATGTAAAGTCTGCAACGAAAGCTTCGCGCAAAAGCAATCTCTATCTCGTCACTTCAAAACACACAACATAGATAGGaattataaatgcgaaatttgtgACAAACGCTTCATAAGAAAACAGCATTTATCGCAACATGTCAGGACGCACGCGgcaagaagaaattacaaatgtgatgTTTGCAACAGGCGGTTAACAACGAAACATACTTTAAATCGTCACATCGAAGCACACACCGGAgcgagaaattataaatgtgaattttGCGACAAACGCTTCATAACACAACGACATCTATCGCAACACGTCAAGTCGCACaccggagaaaaaaattacaaatgtgaagtttgcagcAAATGCTTCGTAACAAAGCAACGCATAAAGCAACACGTCAGATCGCACactggagaaagaaattacaaatgtgaaatttgcaacaaatcctTAAGATCGAAACAAAATCTACAACTTCACGTCGAATCACACACCgcagaaagaaattataaatgtgaacttTGCACCAAGTTTTTCGTAACGGAAGAAAATTTATCGCAACACGCCGCAACCCACAAAGTTAAGTACAAATGTGACGTTTGCGACAGATACTTCGCATGGAAATGCGATCTGTCGCAACACGTCAAAGCGCACGCCGATGGAACGAGTtacaaatgcgaagtttgcaacaaatgcttcacggCGAAAGGACGCCTGACGCAGCACGTCAAAGCGCACGCCGGAGAAGATAgatgtgaagtttgcaagaaGTGCTTCAAAACGAAAGTGTGTTTGTTGCGACATCTCAGGAAGCACACCGGCAAGAGAGACTACAAGTGCGAGGTTTGCAACAAACGTTTCACAACTAAACAAATTCTATCGCAGCACGACAAAACGCACACCGGAgagagaaattacaaatgtgacgTTTGCAGCAAATGTTTTGTAAGAAAAGAACATTTATTTCAGCATGTCAGGACACACGTCGGAGAGAAAAATTATAGatgtgaagtttgcgacaaatgTTTCGTAACGAATCGAAATCTGTTACGGCACGCCGAAATACACACCagggaaagaaaatataaatgtgaCGTTTGCAAAAGTTCCTTCGTCACGAAAAAAGATCTATGTTGTCACATCAAAACACACGCCAGAGAGAAAGAGAAGTTATAG
Protein Sequence: MEIDVKDFKLVVEVKSETVECTTLFPKLQPCVYSYPTDVDHDEMKCVPTVTEEKYEVSCAGIAANDIRIKLDLGDDDDDPLISETRKDALEELHTQEEIKDPTVFQRKDVMCLDEGSYECDVCTKSFSTKECFKSHVKTHVKIKYKCKVCNESFAQKQSLSRHFKTHNIDRNYKCEICDKRFIRKQHLSQHVRTHAARRNYKCDVCNRRLTTKHTLNRHIEAHTGARNYKCEFCDKRFITQRHLSQHVKSHTGEKNYKCEVCSKCFVTKQRIKQHVRSHTGERNYKCEICNKSLRSKQNLQLHVESHTAERNYKCELCTKFFVTEENLSQHAATHKVKYKCDVCDRYFAWKCDLSQHVKAHADGTSYKCEVCNKCFTAKGRLTQHVKAHAGEDRCEVCKKCFKTKVCLLRHLRKHTGKRDYKCEVCNKRFTTKQILSQHDKTHTGERNYKCDVCSKCFVRKEHLFQHVRTHVGEKNYRCEVCDKCFVTNRNLLRHAEIHTRERKYKCDVCKSSFVTKKDLCCHIKTHAREKEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -