Gspi031125.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390740.1:768044-770441[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.68 48 5.7 2.8 1 13 108 120 108 121 0.94 2 19 0.0037 0.26 12.8 1.9 1 23 143 165 143 165 0.97 3 19 2.7e-05 0.0019 19.5 7.3 1 23 170 192 170 192 0.99 4 19 0.0004 0.028 15.9 2.8 1 23 198 220 198 220 0.97 5 19 0.0016 0.11 14.0 1.2 1 23 239 261 239 261 0.98 6 19 0.00047 0.033 15.7 3.7 1 23 267 289 267 289 0.98 7 19 5.7e-05 0.004 18.6 2.2 1 23 295 317 295 317 0.98 8 19 0.00046 0.032 15.7 4.2 1 23 323 345 323 345 0.98 9 19 6.9e-07 4.9e-05 24.6 1.3 1 23 351 373 351 373 0.98 10 19 5.5e-06 0.00039 21.7 1.9 1 23 379 401 379 401 0.99 11 19 0.00087 0.061 14.8 0.9 1 23 407 429 407 429 0.96 12 19 8.2e-05 0.0058 18.0 0.2 1 23 435 457 435 457 0.97 13 19 0.00084 0.06 14.9 1.1 1 23 463 485 463 485 0.98 14 19 0.014 0.95 11.1 2.6 1 23 491 513 491 513 0.95 15 19 0.026 1.8 10.2 1.7 1 23 519 541 519 541 0.98 16 19 6.3e-05 0.0045 18.4 2.2 1 23 547 569 547 569 0.98 17 19 7.1e-06 0.0005 21.4 3.6 1 23 575 597 575 597 0.99 18 19 0.0099 0.7 11.5 3.2 1 23 603 625 603 625 0.97 19 19 0.0006 0.043 15.3 1.0 1 23 631 653 631 653 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGGAAACACATTGTTCTAACTTGGCGATTACGGAGGTAAAACTCGAACAATTAGAAGTTTCAACTTCCTACGGGTATTTTGAGGAAATTGTAAAAGATGCCGTTTACATAAACGAAGAGTTGCATGCAGATCCTGTGCCGATCATACAAATACAACTTGAAGTCGCAAGATCTGCTTCTGATATGAAAATTAAGTTGGATCCCAGCCATGTCGACAGGCAGCCGAAAATTAATCTTGAAACTTCAGTCGGTTTAACGGATCATCGTTGTGACATTTTTGCGAAAAAACGCATGACACCACTAGGCAATGGAAGATATAAATGTAAAGTTTGTTTCAGACGTTTCAAAACGAAAATTAGGTCGAAAGATAAGATCCACAAGAAGAATtctcaaagaaaaaattatatgcaGGAAGGAAGttacaaatgcaatttttgtacGAAATCGTTCGCTAGAACGGCAATTCTTCTGAAACACACGAAACTGCACACCTGTCAAAGTTACAAGTGCAAAACTTGCAAGAAATCCTTCCGAACGGCAACGCATCTgtcgaaacataaaaaaatgcacGTCGTCGAAAGAAACTAcgaatgtgaaatttgtaacaaatgttTCGCAAGTAAACGTACCATGTTGGACCATAAAAAAGAACATTTCAATCTAAAAAACGACAAATGCGAAATTTACGTGAAAACGAACGATGGAAGCTACAGATGCGAAGTTTGCGCGAGAAGCTTCGCGAAAAAACACAGCATGTTGGAACACGTGAAAATACACACTGGCGAACGAAACcacaaatgcgaagtttgcgCCAAGCGCTTCACGCGAAAACAAACCATGACGGAGCACGTGAAAACGCACGCCGGCGAAAAAAAccacaaatgcgacgtttgcggCAATCGCTTCGCGACAAAACAAACTCTGACGACGCACCTGAAAATCCACTCCGGCGAAAAAAgccacaaatgcgaaatttgctcCAAGCGCTTCTCGAGGAAGCAAACCATGCTGGACCACGTGAAACGACACACCGACGAGAAAAACTTCAAATGCGACAATTGCGGAAAATCGTTCACGAGGAAACAAGAGCTAGTGAACCACGTGAAATTGCACACCGGCGACAGGAGctacaaatgcgacgtttgcgaCAAATCCTTCTCGAGGAAACAATACGTGACGGAACACAGGAAAATCCACAGCGACGAAAAAAACCACGCGTGCGAAATTTGCCCGAAACGATTCGTGACGAAGCAACGAGTCCTGAACCACATGGTGACGCACGTCGGCGAACGGAACTACGAATGCGAGCTTTGCCCCAAACGGTTCGTCACGAAGAAAACTTTGCTGGAACACGCGGCGATGCACTCCGATAAGAAAAAACACCAGTGCGGGATTTGCGCGAAAAGTTTCGCGAGGAAACAAAGCGCCGTCAAACACGCGAAGACGCACACCGCCGAGCGAAATTTTAAATGCGACATTTGCCATAAGCGCTACACGACGAGGCAGATAATGCTGGCGCACGTGAAATCGCACACCGACGAGAAGAAATTCGAATGCGACGTTTGCGCCGGACGCTTCAGGACGAAGCACGTGCTGATGGAACACACGAAGAGACACACCGGCGAGAAAGATTACGAGTGCGAGATTTGCACGAAACGGTTCTCGAGGAAGCACAGCATGTTGGGGCACATGACAGTTCACGGCAGCGAAAGAAATTACGTCTGTGAGATTTGCAAGAATTGCTTTAGGAGTAAACAGAGCTTGTCGAGGCACATGAGGATACACGCCGGTGGacgaaactacaaatgtgacgTTTGTCACAGGTGCTACGGGACGAAGGAAAGTATGCTGGAACACGCGGAAAGGCACGTTGGTAAAATGGATCACGAATGCGAATTTTGCGGGGAGTTCTTCAAGACAAGAAAGGCGTTGGTTGAACATGCAAAGGAACACGAAGAAAACAAGGAGTcggttcgaaaatttcgaaatgaCGTACAAATTGAGAAATTTGATGTGGAGGAGACTATGTCCGTAAAGGAAGAGATCGTGGAGATCGACAATGATACGATGGAACGACTGTCGACGGCTAGGAGCAACAACGACGCCGGCATCTCAGTCAAGGAAGAGAATCCGAAATCGAcggatgtttttaatttatggctAACGCTCAACGACGACGTTGTAatcaaggaagaagaaaatttcGACGCGTAA
- Protein Sequence
- METETHCSNLAITEVKLEQLEVSTSYGYFEEIVKDAVYINEELHADPVPIIQIQLEVARSASDMKIKLDPSHVDRQPKINLETSVGLTDHRCDIFAKKRMTPLGNGRYKCKVCFRRFKTKIRSKDKIHKKNSQRKNYMQEGSYKCNFCTKSFARTAILLKHTKLHTCQSYKCKTCKKSFRTATHLSKHKKMHVVERNYECEICNKCFASKRTMLDHKKEHFNLKNDKCEIYVKTNDGSYRCEVCARSFAKKHSMLEHVKIHTGERNHKCEVCAKRFTRKQTMTEHVKTHAGEKNHKCDVCGNRFATKQTLTTHLKIHSGEKSHKCEICSKRFSRKQTMLDHVKRHTDEKNFKCDNCGKSFTRKQELVNHVKLHTGDRSYKCDVCDKSFSRKQYVTEHRKIHSDEKNHACEICPKRFVTKQRVLNHMVTHVGERNYECELCPKRFVTKKTLLEHAAMHSDKKKHQCGICAKSFARKQSAVKHAKTHTAERNFKCDICHKRYTTRQIMLAHVKSHTDEKKFECDVCAGRFRTKHVLMEHTKRHTGEKDYECEICTKRFSRKHSMLGHMTVHGSERNYVCEICKNCFRSKQSLSRHMRIHAGGRNYKCDVCHRCYGTKESMLEHAERHVGKMDHECEFCGEFFKTRKALVEHAKEHEENKESVRKFRNDVQIEKFDVEETMSVKEEIVEIDNDTMERLSTARSNNDAGISVKEENPKSTDVFNLWLTLNDDVVIKEEENFDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -