Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:13791665-13795988[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.5e-05 0.001 20.4 0.6 1 23 170 192 170 192 0.98

2 16 0.00041 0.029 15.8 5.6 1 23 198 220 198 220 0.97

3 16 0.00018 0.012 17.0 3.4 1 23 226 248 226 248 0.98

4 16 0.036 2.6 9.7 3.4 1 23 254 276 254 276 0.99

5 16 7.1e-05 0.005 18.2 1.3 1 23 282 304 282 304 0.98

6 16 0.00065 0.046 15.2 2.6 1 23 310 332 310 332 0.99

7 16 0.00029 0.021 16.3 4.3 1 23 337 359 337 359 0.98

8 16 2.1e-05 0.0015 19.9 1.6 2 23 366 387 365 387 0.97

9 16 4.5e-05 0.0032 18.9 1.7 2 23 394 415 393 415 0.97

10 16 0.00011 0.0076 17.7 2.9 3 23 423 443 422 443 0.98

11 16 2.6e-05 0.0018 19.6 5.2 1 23 448 470 448 470 0.99

12 16 6.5e-06 0.00046 21.5 0.7 1 23 476 498 476 498 0.98

13 16 5.4e-05 0.0038 18.6 4.9 2 23 505 526 504 526 0.97

14 16 3.9e-06 0.00028 22.2 4.7 2 23 533 554 532 554 0.98

15 16 1.6e-05 0.0011 20.3 1.8 1 23 560 582 560 582 0.99

16 16 7.4e-06 0.00052 21.3 3.7 1 23 588 610 588 610 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.5e-05	0.001	20.4	0.6	1	23	170	192	170	192	0.98
2	16	0.00041	0.029	15.8	5.6	1	23	198	220	198	220	0.97
3	16	0.00018	0.012	17.0	3.4	1	23	226	248	226	248	0.98
4	16	0.036	2.6	9.7	3.4	1	23	254	276	254	276	0.99
5	16	7.1e-05	0.005	18.2	1.3	1	23	282	304	282	304	0.98
6	16	0.00065	0.046	15.2	2.6	1	23	310	332	310	332	0.99
7	16	0.00029	0.021	16.3	4.3	1	23	337	359	337	359	0.98
8	16	2.1e-05	0.0015	19.9	1.6	2	23	366	387	365	387	0.97
9	16	4.5e-05	0.0032	18.9	1.7	2	23	394	415	393	415	0.97
10	16	0.00011	0.0076	17.7	2.9	3	23	423	443	422	443	0.98
11	16	2.6e-05	0.0018	19.6	5.2	1	23	448	470	448	470	0.99
12	16	6.5e-06	0.00046	21.5	0.7	1	23	476	498	476	498	0.98
13	16	5.4e-05	0.0038	18.6	4.9	2	23	505	526	504	526	0.97
14	16	3.9e-06	0.00028	22.2	4.7	2	23	533	554	532	554	0.98
15	16	1.6e-05	0.0011	20.3	1.8	1	23	560	582	560	582	0.99
16	16	7.4e-06	0.00052	21.3	3.7	1	23	588	610	588	610	0.98

Sequence Information

Coding Sequence: ATGCTTCAAGACGATGTTATTTTATCATATGTCACTCATTTGGATGCATTACACAAGGATTTTACTAAGAGGTTTGACGATctcttaaatttacaaattcctcAATGGATAATTAATCCGTACAATATCACAGCCATGGAAGAAGCCAATGTGATAATGCAAGAAGAGTTGATCAACATCAACACAGACGAGAAGCATAAGCAGAAGTTCAACCAAGGCTATCAGAAGTTCTGGTTGCAGCGCGACATTGATACACTAAATGGAGGATCTGCCGTTACTATAAAGAAAGAAGAATGTGAAGATGTATCGGTGACAGGAGTAACAGTCGTCGATGTAGGTGTAGCACAAAATGTTACTGGAATTGCAACTAAtgacatcaaaattaaattggatcTTAACGAGGATGGTGGTAAGAAGTCGGTTGAAGAAGACTTAATGAAGAAAGTTATACTGCAACATATGAAATTGCATTTCGATGATAAAACGCAAGATGACGACGACGGGaattataaatgtgatatttgcAATAAGTTATTTGCGACGAGGGGAAGTCTCCAAAGTCACGTGAAGCTACACACTGACGAAAGGAACtacaaatgcgagatttgcaCCAAATGCTTCACGACGAAACACTACATGTTGGAGCACGTGAAAGCGCACACGGGACAAACTGactttaaatgtgaaatttgctcgAAGTGCTTCACATCGAAACAAAGCATGCTGCAGCACACAATCATACACACCGGCGAAAGGAACTACGAATGTGAAATTTGTTGCAAACGCTTCACGACGAACATGATCATGCTGCGGCACATGAAAACccacaccggcgaaagaaattacaaatgtgggACGTGCGACAAGCGCTTTGCGACGAAATACTCGATGCTGGTGCACACGAAAGGACACGTCGGCgaacgaaattataaatgcgagGTTTGCGACAAACGCTTCTTGACGAAGCAACGCTTATCGAAACACGTGAAAACGCACGGCGAACGGAActtcaaatgtgaaatttgcgacaaatgtTACTCTTCGGAGCACAACATGTTGGAGCACCGAAAGGCGCACACCGACGAGGACAGCATCAAGTGCGAAGTTTGCGGCAAGTGCTTCGCGACCAACCGATACATGCTGCAGCACATGAAGGCGCACACCGATGAGCAAAacaacaaatgtgaaatttgcggcaAGTGCTTCGCGACGGAGCGCTACATGTTGCAGCACATGAAGGCGCACAGCGACGTGCAGACAAACGCGTGTGAAATCTGCGCAAAATGCTTCGCGACGAAACACCAGCTGATGCAACATCTGAAGATACACGGGGAGCGGAGCTTCAAGTGCGAGATTTGCAGCAAGTGCTTCGCGACGAAGCAACAGCTGTCGAAGCACAGCAAGACGCACACTGGGGAAAGGAACTTCAAGTGCGAAGTCTGCGGCAAACGCTACGCGACGAAGCGAAACATGCTCGAGCACATGAAGGCGCACACCGACGAGGAAAACAATAAATGCGAGGTTTGCAATAAGTGCTTCTCGACGAAGCACTATCTGTCGGCGCATTTGAAAGCGCACACCGACGGAGACAACAATAAATGCGAACTTTGCGGGAAGTGCTTCACGACGAAGCAATATCTCACCCTGCACATGAAGAGGCATTCGGGCGAGCGGaactacaagtgcgaaatttgcaacaaatgcttcgtGTCGAAACAGGAAATCGCCGCTCACTTGAAAAGGCACACCGGAGAAAGGAATCATGAGTGTGCTGTTTGCGGCAAGCGGTTCGCGACCAAAGAACATCTGTCGAAACACAGCAGGACGCACAAAACGAATTATAAATGTAACGGCGAGGGCTCATCGACAAAACGAGATTCGCTGCAAGACACGAAATCAAACGACGAGGAAAGGAACTGTAAACTTGAAACAACTGCaatagaagaaattaaagaGATTTACAAGCTGTTCATTAAAGAAGAGACTGGTATGGTCCTGGAAAAGGATAATTTGGGAACCAATGGTAAGAATTACTTATTCAGTTTCGCTGGGCTTTCACTGGCTATAAATTTAAGGCCCCTGCAAATGATCCGATTAGATTTTTAG
Protein Sequence: MLQDDVILSYVTHLDALHKDFTKRFDDLLNLQIPQWIINPYNITAMEEANVIMQEELININTDEKHKQKFNQGYQKFWLQRDIDTLNGGSAVTIKKEECEDVSVTGVTVVDVGVAQNVTGIATNDIKIKLDLNEDGGKKSVEEDLMKKVILQHMKLHFDDKTQDDDDGNYKCDICNKLFATRGSLQSHVKLHTDERNYKCEICTKCFTTKHYMLEHVKAHTGQTDFKCEICSKCFTSKQSMLQHTIIHTGERNYECEICCKRFTTNMIMLRHMKTHTGERNYKCGTCDKRFATKYSMLVHTKGHVGERNYKCEVCDKRFLTKQRLSKHVKTHGERNFKCEICDKCYSSEHNMLEHRKAHTDEDSIKCEVCGKCFATNRYMLQHMKAHTDEQNNKCEICGKCFATERYMLQHMKAHSDVQTNACEICAKCFATKHQLMQHLKIHGERSFKCEICSKCFATKQQLSKHSKTHTGERNFKCEVCGKRYATKRNMLEHMKAHTDEENNKCEVCNKCFSTKHYLSAHLKAHTDGDNNKCELCGKCFTTKQYLTLHMKRHSGERNYKCEICNKCFVSKQEIAAHLKRHTGERNHECAVCGKRFATKEHLSKHSRTHKTNYKCNGEGSSTKRDSLQDTKSNDEERNCKLETTAIEEIKEIYKLFIKEETGMVLEKDNLGTNGKNYLFSFAGLSLAINLRPLQMIRLDF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00741107; iTF_00741085;
90% Identity: iTF_00741085;
80% Identity: -