Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390738.1:39325824-39327512[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00019 0.013 16.9 5.6 1 23 122 144 122 144 0.98

2 14 4.3e-05 0.0031 18.9 3.2 1 23 150 172 150 172 0.99

3 14 3.1e-06 0.00022 22.5 1.2 1 23 178 200 178 200 0.99

4 14 0.0033 0.24 13.0 0.5 1 23 206 228 206 228 0.98

5 14 6.2e-06 0.00044 21.6 4.3 1 23 234 256 234 256 0.98

6 14 0.00023 0.016 16.6 1.8 1 23 262 284 262 284 0.96

7 14 6.8e-06 0.00048 21.4 4.4 1 23 290 312 290 312 0.98

8 14 0.0019 0.13 13.8 7.7 1 23 318 340 318 340 0.98

9 14 9.4e-06 0.00066 21.0 0.5 1 23 346 368 346 368 0.98

10 14 1.7e-06 0.00012 23.3 0.9 1 23 374 396 374 396 0.98

11 14 0.00014 0.01 17.3 2.3 1 23 402 424 402 424 0.98

12 14 1.3e-06 9.1e-05 23.7 1.2 1 23 430 452 430 452 0.98

13 14 4e-06 0.00028 22.2 2.2 1 23 458 480 458 480 0.99

14 14 0.0001 0.0073 17.7 0.7 2 23 487 508 486 508 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00019	0.013	16.9	5.6	1	23	122	144	122	144	0.98
2	14	4.3e-05	0.0031	18.9	3.2	1	23	150	172	150	172	0.99
3	14	3.1e-06	0.00022	22.5	1.2	1	23	178	200	178	200	0.99
4	14	0.0033	0.24	13.0	0.5	1	23	206	228	206	228	0.98
5	14	6.2e-06	0.00044	21.6	4.3	1	23	234	256	234	256	0.98
6	14	0.00023	0.016	16.6	1.8	1	23	262	284	262	284	0.96
7	14	6.8e-06	0.00048	21.4	4.4	1	23	290	312	290	312	0.98
8	14	0.0019	0.13	13.8	7.7	1	23	318	340	318	340	0.98
9	14	9.4e-06	0.00066	21.0	0.5	1	23	346	368	346	368	0.98
10	14	1.7e-06	0.00012	23.3	0.9	1	23	374	396	374	396	0.98
11	14	0.00014	0.01	17.3	2.3	1	23	402	424	402	424	0.98
12	14	1.3e-06	9.1e-05	23.7	1.2	1	23	430	452	430	452	0.98
13	14	4e-06	0.00028	22.2	2.2	1	23	458	480	458	480	0.99
14	14	0.0001	0.0073	17.7	0.7	2	23	487	508	486	508	0.98

Sequence Information

Coding Sequence: ATGGATATCCAGTTACACGATTCCAACTTCATCAACAACATAGTAAAACCTGAACCGACAGAATTTCCAACCTTAAGCCCTACACCGCAATCTTGCTACGGATATCCTCGCGTCGAAGTCGATGACAAAAACGCAAAATGTGCCGTTTTAATAAAGAAAGAGGAACGTGCTTCTACGCCAGCGGCAGAAATAAAAGTCGACATTTCAAACACCGGAATTACATGCAACGATCCCAAAATTAAGTCGGATCTTACCAACGCCGCCGATTTGTTGAACTCTTCGTGTTGGAGCGAGGAATTCAAAAGTGAGTTTTCCGCGGCAAATAATTCCCAAACGAAATTAGAGCGTGCCGTTGAACGAAATTACCGGTGCCAAATTTGCACCAAACGTTTCAAAATGAAACAGCACCTGTCGAATCACACGAAAatacacaccggcgaaagaaactACAAGTGCGAGCTCTGCACGAAATCCTTTGTGATAAAATCGCACCTGTCAAATCACACGAAGATACACATCGACGAAAGAAAGTACAAGTGCGACATTTGTGCAAAGTGCTTCGTAAGAAAAGGTGACTTGGCAAAACACGCGAAAatgcacaccggcgaaagaaactacaagtgtgaaatttgcggcAAACTCTTTCAAGCAAAAACGATCCTATCGACTCACATGAAAGTGCACACCGGCGAGAGAAACTACGAGTGCGAAACTTGCAAGAAATGCTTCACGACCAAACAAAATCTGTCGAACCACGTGAAaatacacaccggtgaaagaaattacaagtgcgacGTTTGCACGAAACGCTTCATAACGAAGCAGAAGCTATCGAGTCACGTGACGTTGCACACGGGCGAGAGAAATTTCAAGTGCCAAGTTTGCAGCAAGTGTTTCACGACTAAACAGAATTTATTGAACCACGTTAAGATACACAACGGCGAAAGAAACCACAAGTGCGAACTTTGCGCCAAACGCTTCAAAACGAAGCGGCACCTCTCGAATCACTCGAAAACGCACACCGGCGAACGAAATTACAAGTGCGAGGTCTGCGCGAAATCCTTCGTAACGAAAGGCGACCTACTGAAGCACACGACGATGCACACCGGCGAGAGGAACTTCATGTGCGAGATTTGCACCAAACGCTTCGGGAGAAAGTCCACTCTGCTGGTccacatgaaaatacacaccgACGAAAGAAACTAcgagtgcgaaatttgcgcgaAACGCTTCAAGACGAAAGAGCACGTCTCGTCCCACACGAAAATTCACACGGGCGCGAAGAACTATGTCTGCGAGGTTTGCACCAAATCCTTCACGACGAAACAGAGTCTGGAGAACCACACGAAAATTCACACGGGCGAAAGGGattacaagtgcgaaatttgcaccAAGTGTTTCATAACGAAAGGTGACTTGTCGATCCACGTGAAGAggcacaccggcgaaagaaataacaaatgcgaagtttgcgCGAAAGGCTTCATAACGAAACAAAATCTGCTGAAACATACCAAGATACACGCAGGAAAACGAAATGTATCGTTGGATTGTGAAAACGCCGAGGAGGAGCCTAAAAGAAAGTTTCCATGTAAAATAAGCCATGGTGAAAGAGTGTTGTTTAAGGAAGAGGCTCCATTCATAAAAAAAGAAACGTTGGATATTGACAATGGTAAGAACTTCTCGTGA
Protein Sequence: MDIQLHDSNFINNIVKPEPTEFPTLSPTPQSCYGYPRVEVDDKNAKCAVLIKKEERASTPAAEIKVDISNTGITCNDPKIKSDLTNAADLLNSSCWSEEFKSEFSAANNSQTKLERAVERNYRCQICTKRFKMKQHLSNHTKIHTGERNYKCELCTKSFVIKSHLSNHTKIHIDERKYKCDICAKCFVRKGDLAKHAKMHTGERNYKCEICGKLFQAKTILSTHMKVHTGERNYECETCKKCFTTKQNLSNHVKIHTGERNYKCDVCTKRFITKQKLSSHVTLHTGERNFKCQVCSKCFTTKQNLLNHVKIHNGERNHKCELCAKRFKTKRHLSNHSKTHTGERNYKCEVCAKSFVTKGDLLKHTTMHTGERNFMCEICTKRFGRKSTLLVHMKIHTDERNYECEICAKRFKTKEHVSSHTKIHTGAKNYVCEVCTKSFTTKQSLENHTKIHTGERDYKCEICTKCFITKGDLSIHVKRHTGERNNKCEVCAKGFITKQNLLKHTKIHAGKRNVSLDCENAEEEPKRKFPCKISHGERVLFKEEAPFIKKETLDIDNGKNFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -