Gspi031000.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Geotrupes spiniger
Gene Symbol
-
Assembly
GCA_959613385.1
Location
OY390740.1:190557-194332[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.028 2 10.1 3.8 1 23 73 95 73 95 0.95
2 17 0.016 1.1 10.9 1.0 1 23 111 133 111 133 0.97
3 17 0.0018 0.13 13.8 0.3 1 23 139 161 139 161 0.97
4 17 0.0016 0.11 14.0 8.2 1 23 167 189 167 189 0.97
5 17 0.00018 0.013 17.0 4.5 1 23 195 217 195 217 0.98
6 17 7.4e-06 0.00052 21.3 4.3 1 23 223 245 223 245 0.98
7 17 3e-05 0.0021 19.4 1.3 1 23 251 273 251 273 0.98
8 17 7.8e-05 0.0055 18.1 3.5 1 23 279 301 279 301 0.99
9 17 6.1e-06 0.00043 21.6 1.0 1 23 447 469 447 469 0.98
10 17 2.5e-06 0.00018 22.8 1.9 1 23 475 497 475 497 0.99
11 17 0.0013 0.092 14.3 0.8 1 23 503 525 503 525 0.97
12 17 3.9e-06 0.00028 22.2 5.5 1 23 531 553 531 553 0.99
13 17 5.2e-07 3.6e-05 25.0 4.9 1 23 559 581 559 581 0.98
14 17 0.046 3.3 9.4 4.7 1 23 587 609 587 609 0.99
15 17 6.1e-05 0.0043 18.5 5.9 2 23 616 637 615 637 0.96
16 17 2.8e-06 0.00019 22.7 4.7 2 23 644 665 643 665 0.97
17 17 9.7e-06 0.00069 21.0 5.3 1 23 671 693 671 693 0.99

Sequence Information

Coding Sequence
ATGGAGATCGTTGGAGTAAAATCCGAATCGACGGATTTTTCACCAGAAGAATCTCTCTGTGGATATTCCCGTATTGGAATCGACGAAATCGAAGTTGACATAAAGGAAGAGGAATACGAAGATGTTCCAGAACCGATTACAACAATACCACTTGGCACCGATAATTCTGAGAGGAACGGTACTTTAAAACACACGACAATAGGCGCTGACGGAAGACACATGTGCCAAATTTGCTCCAGCTGTTTCAGCACGAGGAAACTTTTACTGCAACACGTAGAATTacatgttgaaaaaaataatcactgtTTCATCCGCACCACCGAAGCTAAtcacaaatgcgacgtttgcacGAAATTGTTCGCCACAACGGGAATTCTTCAGACCCACATGAAAGCGCACGCGACAGCGCGAAActataaatgcgaaatttgcgacaaagGCTTCTTGACGAAGCGCGGCTTATTGCAACACGTCGTAAgacacaccggagaaagaaaccacaaatgtcaaatgtgtaaCAAATGTTTCACAACGAAACACGTTCTGTTGCGACACGTCAAGGCACACGCCGGAgagaaaaatcacaaatgtgaaatatgcGAGAAACGCTTCACGACGAAACAACATCTCGGCGATCACGTCAACAGACACACGGGAGAACGAAGTTacgaatgtgaaatttgcaacaaatgcttctcGACAAAGCAATATCTGTCGCAGCACGTGAAGAGGCACACCGGAGAGAGAAATTacgaatgcgaaatttgcaacaagtgcTCCACAACGAAACAGGATCTGGCACGTCACGTTGCCCGACACAccggaaaaaataatttcaaatgcgaaatttgccaCCAGGTTTATAGGAAAAGGAAATGGTTGTTGAGACATGTGAAGACGCACACTGAAAACAGCAGCAAGGTTCAGTCTGTTCAATATTTTCCACGTGTAGTCTCAATGGacggaaaagaagaaattagcAAATTTGAGAAACCACTTGTTAAGATGGAGACTGGTCTCTTCGTAAGAAACAACTTGGAGAACAACTGCGTTACCATAAAGGAAGAGAGGTATGATAATTCTGTGCCAATAACAACAGTAACACACAATACCGTTGACGTGGCGCAACATGTTTTAAACGATGGAATTGCACCTGATGTAAAAATTAAGTTGGATCTCGACGACGACAATGATTCGTTGAATTTTTGCAGCCACTTGGAGTCCGGCGAACGAGGTAATGCCGCCAGAGGTTGCAGCACAAGAAAGATCATATTGAAGCAAGATCTGATCTGCACGGGGATTTTTCAAAGTAACGACGCACACACCAACGAAGTAAATTACAAATGTAAGATTTGCACGAAATTATTCTCTACAGCGGGAAATCTTCGTAGTCACGTGAAATtacacaccggcgaaagaaactacaaatgtgaactATGCGACAAGCGCCTCAAGACGAAATCGAATCTATCGGAACATCTGAAAACGCACGCCGGACAAAGAAactacaagtgtgaaatttgcgagAAACGCTTCGCGGCGAAGCACGATCTGCCGCGGCACGTCGAAAGGCACAACGGAGagagaaactacaaatgtgaaacttGCGACAAACGCTTCAGAACTAAACACGATTTATCGCGACACGTCAAAAGACACACCGGAGAAAGAGCtcacaagtgcgaaatttgcgacaaatgtTTCACGACGAAGGAAAATCTTTGGCAACACGTTAAAACGCACAccgaaaaaaatttttataaatgtgaaatttgctgcAAACGCTTCGCGGCGAGACACGATCTATCACAACACGTCAAAAGACACGCGGGCGAGAGAAACtgcaaatgcgaaatttgcgataAGCGTTTCACGACGAAACACGATCTATCGTTGCACGTCAAAAGGCACAATGGCgaaagaaattgcaaatgtgaaatttgcggcaAGTGCTTCACGGCGAAAGATAATTTATCGCAACACATCAAGACACACAACGAAGACAGGTATTATAAATGCGAAGTTTGTAACAAATGCTTCACGACGAAGAAATACCTGTCGCTGCACGTCAAAACACACgccaaagaaagaaattataaatgcgacGCTTGCGATACTAGAGATAGGAAACCATCAATGGCTGCAAATGAAAATCGTATTGATACTGACATTAAGGAAGACGTCATTTCATGGCAAGCACTTCACAATGAGGTTGTAATCAAGGAAGAATATACCTTGAATGAATGGGAACCTATAGCCGATGTAGCACCACTATCAGATCATTGA
Protein Sequence
MEIVGVKSESTDFSPEESLCGYSRIGIDEIEVDIKEEEYEDVPEPITTIPLGTDNSERNGTLKHTTIGADGRHMCQICSSCFSTRKLLLQHVELHVEKNNHCFIRTTEANHKCDVCTKLFATTGILQTHMKAHATARNYKCEICDKGFLTKRGLLQHVVRHTGERNHKCQMCNKCFTTKHVLLRHVKAHAGEKNHKCEICEKRFTTKQHLGDHVNRHTGERSYECEICNKCFSTKQYLSQHVKRHTGERNYECEICNKCSTTKQDLARHVARHTGKNNFKCEICHQVYRKRKWLLRHVKTHTENSSKVQSVQYFPRVVSMDGKEEISKFEKPLVKMETGLFVRNNLENNCVTIKEERYDNSVPITTVTHNTVDVAQHVLNDGIAPDVKIKLDLDDDNDSLNFCSHLESGERGNAARGCSTRKIILKQDLICTGIFQSNDAHTNEVNYKCKICTKLFSTAGNLRSHVKLHTGERNYKCELCDKRLKTKSNLSEHLKTHAGQRNYKCEICEKRFAAKHDLPRHVERHNGERNYKCETCDKRFRTKHDLSRHVKRHTGERAHKCEICDKCFTTKENLWQHVKTHTEKNFYKCEICCKRFAARHDLSQHVKRHAGERNCKCEICDKRFTTKHDLSLHVKRHNGERNCKCEICGKCFTAKDNLSQHIKTHNEDRYYKCEVCNKCFTTKKYLSLHVKTHAKERNYKCDACDTRDRKPSMAANENRIDTDIKEDVISWQALHNEVVIKEEYTLNEWEPIADVAPLSDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-