Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:4254007-4255974[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00022 0.016 16.7 3.2 1 23 116 138 116 138 0.99

2 17 1.1e-07 8e-06 27.1 1.4 1 23 156 178 156 178 0.99

3 17 0.0013 0.088 14.3 4.1 1 23 184 206 184 206 0.97

4 17 8.3e-05 0.0058 18.0 7.4 1 23 212 234 212 234 0.98

5 17 1.4e-06 0.0001 23.6 1.3 1 23 240 262 240 262 0.98

6 17 0.14 10 7.8 8.3 1 23 268 290 268 290 0.98

7 17 2.8e-05 0.002 19.5 0.8 1 23 296 318 296 318 0.97

8 17 7e-07 4.9e-05 24.6 2.6 1 23 324 346 324 346 0.99

9 17 0.00035 0.025 16.0 1.2 1 23 352 374 352 374 0.95

10 17 3.9e-05 0.0028 19.1 3.4 1 23 380 402 380 402 0.98

11 17 0.00033 0.023 16.2 5.7 1 23 408 430 408 430 0.98

12 17 0.053 3.7 9.2 7.4 1 23 436 458 436 458 0.97

13 17 1.1e-06 7.5e-05 24.0 1.8 3 23 466 486 464 486 0.98

14 17 1.1e-05 0.00075 20.8 2.4 1 23 492 514 492 514 0.95

15 17 0.02 1.4 10.5 2.9 1 23 520 542 520 542 0.92

16 17 0.0021 0.15 13.6 8.7 1 23 548 570 548 570 0.99

17 17 2e-05 0.0014 20.0 1.8 1 23 572 594 572 594 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00022	0.016	16.7	3.2	1	23	116	138	116	138	0.99
2	17	1.1e-07	8e-06	27.1	1.4	1	23	156	178	156	178	0.99
3	17	0.0013	0.088	14.3	4.1	1	23	184	206	184	206	0.97
4	17	8.3e-05	0.0058	18.0	7.4	1	23	212	234	212	234	0.98
5	17	1.4e-06	0.0001	23.6	1.3	1	23	240	262	240	262	0.98
6	17	0.14	10	7.8	8.3	1	23	268	290	268	290	0.98
7	17	2.8e-05	0.002	19.5	0.8	1	23	296	318	296	318	0.97
8	17	7e-07	4.9e-05	24.6	2.6	1	23	324	346	324	346	0.99
9	17	0.00035	0.025	16.0	1.2	1	23	352	374	352	374	0.95
10	17	3.9e-05	0.0028	19.1	3.4	1	23	380	402	380	402	0.98
11	17	0.00033	0.023	16.2	5.7	1	23	408	430	408	430	0.98
12	17	0.053	3.7	9.2	7.4	1	23	436	458	436	458	0.97
13	17	1.1e-06	7.5e-05	24.0	1.8	3	23	466	486	464	486	0.98
14	17	1.1e-05	0.00075	20.8	2.4	1	23	492	514	492	514	0.95
15	17	0.02	1.4	10.5	2.9	1	23	520	542	520	542	0.92
16	17	0.0021	0.15	13.6	8.7	1	23	548	570	548	570	0.99
17	17	2e-05	0.0014	20.0	1.8	1	23	572	594	572	594	0.99

Sequence Information

Coding Sequence: ATGGAGACTGATGTGAAAAATTCCAAGTACATGGTTATTGGTGTAAAACCTGAGTCAATAGAATGTGCCGTTACAGTAAAGCAAGAGCAACATGATGATGCTTCTATACAGATGGCTGCATTCGAAACTGTTTATATAACACAAAATGGAATTGCATCTAATGGTATCAAAGTTGAGTTGGAGCCGTCAAGTGCACAAAATGGTGTATGTGAAAGTTGTTCTGAAACATCAATCGACTTGCTAAAGTCTAACAAAACACACTATGAAAAAAACTGTGATGTTTACGCCCAGAATTGTAAAAGGAGCGATATTTCGAAATACAAGACGACTCACGGCAATGAAGgatacaagtgcgaaatttgctcCCAACGTttcaaaacaagaaaatttattttgaaacatatgAGGTTACACGCTGACGAAAAAAATCGAGCTGGGATTTTTCAAACGCTTTATAAGGGCAATTACAAATGTGATATTTGCACAAAATCGTTTACAACAAGAGGAAATCTTCGAAATCACGTGAAAATACACACCGACGAGAGAAACTTCAAATGTGAGATTTGCAACAAACGCTTCAAAACGGAACGTTGTATGTCGCAGCACGTGAAAGCGCACGCCGGCGAAAGAAaccacaaatgcgaaatttgcggcaATTGCTTCACAACCAAGCAAAACATGCACCGTCACATGCAAGTGCACACCGGCGAACGAAACttcaaatgcgaaatttgcccCAAACGCTTTGTGACCAAAGAACACCTGTCAAATCATCTCGAAATACACGTCAgagaaagaaactacaaatgcgGCGCGTGCAGCAAACGCTTCAAAACGAAGCACTGCATGTCGCAACATTCGAAAACGCACGCCggcgaaaaaaaatacaaatgcggGATTTGCGCGAAATCCTTCACGACGAATCAAAATATGCTGCGACACACGCAGGCACACACCGACGAAAGAAATTTTAAGTGCGAAATCTGCACGAAAGGCTTCGTAACTAAAGGACACCTGTCGAAACACATCAAGACGCACGTCGGGGAAAGAAATTACAGATGCGACGTCTGCAGCAAATCCTTCGCGACGAATCACTACATGCTGCAGCACGTCGAGGCGCACAGCGgcgaaagaaatttcaaatgcgAGATTTGCGCCAAGCGCTTCAAAACTAAAGAGTATTTATCGAAGCACTTCAAAATGCACACCGCCGAGAAAATGTTCCAATGCGAAACTTGCAAGAGACGCTTCACGAGGAAGAAATGCCTGCTGCAACATGTCAAAATACATAACGGCGAGAAAAaatacaagtgcgaaatttgcgacgATAGCTTCCGCACGAAACAGTGTTTATCGAAACACTGCAAGACGCACACGGCCGGAAACAACTTCGGTTGCGAAATTTGCGGCAAATGCTTCACAAGAAATCAGAATCTTCTGCGACACGTCGAGACGCACTCGGGGGAGAGGAATTTTCCGTGCGATGTTTGTGACAAGCGGTTCACGAGAAAGCACCACTTGATGGAACACGTGGAAGGACACGCTGGCGAAAAGAGCTTTAGCTGCGAAATTTGCAAGAAGTGTTTTGCCACGAAGCGAATTATGTTGCGGCACGGGAAATTGCACTCGCCTGAGAAAAAGTACCAGTGCGAAATTTGCGCTAAATGTTTCACGACGAAACACTGCATGTTGCGGCACGTGAAACGACACGATTATAAATGCGGAACTTGCGAAAAGTATTTCATGACAAAAGAAAATCTATTGAATCATATGACAACGCATCCTGATGGAACCATCGATGGGAAGTCTCTTCACAACGTTGCATGCATCGTTCCAACAATTACAACCGAAGAAGTGAATAGAATTGGTAAACCGTTGATTAAGGAAGAGACTAACTTCCTAAAGAAAGATAATTTTGAGAGCAACAATTGTAAGTATTATGCTTTGCATTTCGTctttaaattttga
Protein Sequence: METDVKNSKYMVIGVKPESIECAVTVKQEQHDDASIQMAAFETVYITQNGIASNGIKVELEPSSAQNGVCESCSETSIDLLKSNKTHYEKNCDVYAQNCKRSDISKYKTTHGNEGYKCEICSQRFKTRKFILKHMRLHADEKNRAGIFQTLYKGNYKCDICTKSFTTRGNLRNHVKIHTDERNFKCEICNKRFKTERCMSQHVKAHAGERNHKCEICGNCFTTKQNMHRHMQVHTGERNFKCEICPKRFVTKEHLSNHLEIHVRERNYKCGACSKRFKTKHCMSQHSKTHAGEKKYKCGICAKSFTTNQNMLRHTQAHTDERNFKCEICTKGFVTKGHLSKHIKTHVGERNYRCDVCSKSFATNHYMLQHVEAHSGERNFKCEICAKRFKTKEYLSKHFKMHTAEKMFQCETCKRRFTRKKCLLQHVKIHNGEKKYKCEICDDSFRTKQCLSKHCKTHTAGNNFGCEICGKCFTRNQNLLRHVETHSGERNFPCDVCDKRFTRKHHLMEHVEGHAGEKSFSCEICKKCFATKRIMLRHGKLHSPEKKYQCEICAKCFTTKHCMLRHVKRHDYKCGTCEKYFMTKENLLNHMTTHPDGTIDGKSLHNVACIVPTITTEEVNRIGKPLIKEETNFLKKDNFESNNCKYYALHFVFKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -