Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390738.1:36184051-36185939[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0002 0.014 16.8 4.0 1 23 108 130 108 130 0.98

2 14 0.00011 0.0075 17.7 6.7 1 23 136 158 136 158 0.97

3 14 1.8e-07 1.2e-05 26.4 0.7 1 23 164 186 164 186 0.98

4 14 3.9e-07 2.8e-05 25.4 4.7 1 23 192 214 192 214 0.99

5 14 0.0011 0.076 14.5 1.4 1 23 219 241 219 241 0.98

6 14 1.7e-05 0.0012 20.2 3.1 1 23 247 269 247 269 0.99

7 14 1.3e-05 0.00091 20.6 4.1 1 23 275 297 275 297 0.98

8 14 5.6e-06 0.00039 21.7 6.4 1 23 303 325 303 325 0.98

9 14 7.9e-05 0.0056 18.1 5.6 1 23 331 353 331 353 0.98

10 14 1.4e-05 0.001 20.4 4.9 1 23 359 381 359 381 0.99

11 14 3.1e-06 0.00022 22.5 0.6 1 23 387 409 387 409 0.98

12 14 0.0014 0.097 14.2 6.2 1 23 415 438 415 438 0.96

13 14 9.2e-06 0.00065 21.0 4.6 2 23 444 465 443 465 0.96

14 14 9.8e-07 6.9e-05 24.1 1.9 1 23 471 493 471 493 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0002	0.014	16.8	4.0	1	23	108	130	108	130	0.98
2	14	0.00011	0.0075	17.7	6.7	1	23	136	158	136	158	0.97
3	14	1.8e-07	1.2e-05	26.4	0.7	1	23	164	186	164	186	0.98
4	14	3.9e-07	2.8e-05	25.4	4.7	1	23	192	214	192	214	0.99
5	14	0.0011	0.076	14.5	1.4	1	23	219	241	219	241	0.98
6	14	1.7e-05	0.0012	20.2	3.1	1	23	247	269	247	269	0.99
7	14	1.3e-05	0.00091	20.6	4.1	1	23	275	297	275	297	0.98
8	14	5.6e-06	0.00039	21.7	6.4	1	23	303	325	303	325	0.98
9	14	7.9e-05	0.0056	18.1	5.6	1	23	331	353	331	353	0.98
10	14	1.4e-05	0.001	20.4	4.9	1	23	359	381	359	381	0.99
11	14	3.1e-06	0.00022	22.5	0.6	1	23	387	409	387	409	0.98
12	14	0.0014	0.097	14.2	6.2	1	23	415	438	415	438	0.96
13	14	9.2e-06	0.00065	21.0	4.6	2	23	444	465	443	465	0.96
14	14	9.8e-07	6.9e-05	24.1	1.9	1	23	471	493	471	493	0.99

Sequence Information

Coding Sequence: ATGGACGATAGAGCCTTAACCCCCGCGCTAGACTCTCACGTTGAAATTGAACACAAAAGTGTTGTATCGATAAAGAAAGAGGAATGTGAGTCTCCATGGATGGCCGAAGTGAATATTTCAGACGCTGAAATCGCATGTGAAGACGTCAAAGTTAAGTTGGAATTTAGCGATGATGATGATTTAAAGTGCCGACAGGAAGCAAGTGAAAGTGGtcatgaaacgtcaaaaatgttGTATGTAGATAAAATATGTAAGGAATCACTTAACACGACGTGCAAAGTCGGCGACGGAGGCTTTACAACGAAGGGCGGTGAAAAGAAATACAAGTGTGAAGTTTGCATGAGATGCTTCACAAGAAAAAACAGTTTATCTAATCACATGACGATACACACCGGCGAGAGCGATCATGTGTGTGAAATTTGCACCAAGTGTTACACAACGAAGAGGTGTCTAGCGAGGCACATGATGATACACACCGGCGAAAGCAGCttcaagtgtgaaatttgcggGAAGAGCTTCGCGAGAAAAAACTACCTATCGAATCACATGATACTGCACACCGGCGACAAGAAGTACAAGTGCGAAGTCTGCACAAAGTGTTTCACGACTAAGTGGAACCTGTCGAGTCACATGAAAACGCACAACAGCAACAACTACAACTGCGAAATTTGCCTCAAATCCTGCGCGACGAAAATGGATCTGTCGAATCACACGGCGACGCACTCCAAGGAGCaaaattacaagtgcgaaatttgcccCAAATCCTTCACAAGAAAACACATTTTGTTCGATCACATGACGACGCACGACATCGAAAAGAAccacaagtgcgaaatttgcggcaAGCGCTTCACGACGGACACCCACCTGTCGAGTCACATGACGATACACACCGGCGAGAGCAATTACATGTgcgaaatttgcagcaaatgctTCACAAGAAAGAGCCACATGCTGAATCACATGTCGACGCACACGGGCGAGAAGAAACACAAGTGCGACATTTGCGCCAAACGCTGCACGACCAAGAGCAACCTGTCGAGTCACATGAAGCTGCACTTCCGCGAGAGCGGCtacaaatgcgaagtttgcTCCAGATGCTTCACGAGAAAGAACACCCTCTCGAACCACATGACGATGCACACCGGCGAACGGAactacaagtgtgaaatttgcggcATGCGCTTCTCGAAGCGGAACACCCTGTCGAACCACATGGCGATACACACCAGCGAGAAAAatcacaagtgcgaaatttgcacgaGCAGCTTCAAAACGAAGAGCTGCCTGTGGCGGCACACGTCGATGTACCACAAGGGGGGAAGTTGCAAGTGCAAAGTTTGCGGCAAGAGTTACCCGTCGAAAAGGCACCTGTCGCAGCACATGATGATACACACCGacgaaaataattacaagtGTGATATTTGCGATAAAGCGTTTAAAACGAGGCAATACCTGTCGGCACACAAGAAAACGCACATCGGAAACGTACTCTTGGAACGCAAAGAAGAAGATCCTCTACGACAAAATTCACGTGAAGAGGTCGTTGCGTCGCgtataaagaaagaaaagttgGAGATTGACGATGaTACGATTGAAAGAGATCACCCAACAGCTACAAATTTTCGATATGTTGAAGTTGCCAATTCACCAGAAGAGAAACCTGCATTAACAGACGTTTTTGATGTTCGGACTACGTTCAAAACTGAGATTATGatcaaggaagaagaaaatatgattGACACTGCATAA
Protein Sequence: MDDRALTPALDSHVEIEHKSVVSIKKEECESPWMAEVNISDAEIACEDVKVKLEFSDDDDLKCRQEASESGHETSKMLYVDKICKESLNTTCKVGDGGFTTKGGEKKYKCEVCMRCFTRKNSLSNHMTIHTGESDHVCEICTKCYTTKRCLARHMMIHTGESSFKCEICGKSFARKNYLSNHMILHTGDKKYKCEVCTKCFTTKWNLSSHMKTHNSNNYNCEICLKSCATKMDLSNHTATHSKEQNYKCEICPKSFTRKHILFDHMTTHDIEKNHKCEICGKRFTTDTHLSSHMTIHTGESNYMCEICSKCFTRKSHMLNHMSTHTGEKKHKCDICAKRCTTKSNLSSHMKLHFRESGYKCEVCSRCFTRKNTLSNHMTMHTGERNYKCEICGMRFSKRNTLSNHMAIHTSEKNHKCEICTSSFKTKSCLWRHTSMYHKGGSCKCKVCGKSYPSKRHLSQHMMIHTDENNYKCDICDKAFKTRQYLSAHKKTHIGNVLLERKEEDPLRQNSREEVVASRIKKEKLEIDDDTIERDHPTATNFRYVEVANSPEEKPALTDVFDVRTTFKTEIMIKEEENMIDTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -