Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:2795246-2798680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00011 0.0077 17.6 2.1 2 23 11 32 10 32 0.96

2 19 2.5e-05 0.0018 19.7 1.0 2 23 39 60 38 60 0.97

3 19 3e-05 0.0021 19.4 2.9 1 23 66 88 66 88 0.97

4 19 1.2e-05 0.00086 20.7 0.1 1 23 94 116 94 116 0.97

5 19 2.1e-05 0.0015 19.9 3.1 1 23 122 144 122 144 0.97

6 19 5.5e-06 0.00039 21.7 1.5 1 23 150 172 150 172 0.99

7 19 0.00022 0.015 16.7 3.5 1 23 193 215 193 215 0.96

8 19 0.047 3.3 9.4 0.7 6 23 224 241 224 241 0.97

9 19 0.00079 0.056 15.0 4.4 1 23 247 269 247 269 0.97

10 19 0.014 0.97 11.0 7.4 1 23 274 296 274 296 0.98

11 19 0.0025 0.17 13.4 1.5 1 22 301 322 301 322 0.96

12 19 0.013 0.95 11.1 8.0 1 23 420 442 420 442 0.98

13 19 0.0018 0.13 13.8 2.7 1 23 448 470 448 470 0.99

14 19 0.00024 0.017 16.6 0.3 1 23 476 498 476 498 0.98

15 19 0.00058 0.041 15.4 4.5 1 23 504 526 504 526 0.98

16 19 9.5e-06 0.00067 21.0 1.9 1 23 531 553 531 553 0.98

17 19 5.9e-06 0.00042 21.6 1.9 1 23 559 581 559 581 0.99

18 19 0.0011 0.079 14.5 3.9 1 23 587 609 587 609 0.98

19 19 0.0031 0.22 13.1 2.8 1 23 619 641 619 641 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00011	0.0077	17.6	2.1	2	23	11	32	10	32	0.96
2	19	2.5e-05	0.0018	19.7	1.0	2	23	39	60	38	60	0.97
3	19	3e-05	0.0021	19.4	2.9	1	23	66	88	66	88	0.97
4	19	1.2e-05	0.00086	20.7	0.1	1	23	94	116	94	116	0.97
5	19	2.1e-05	0.0015	19.9	3.1	1	23	122	144	122	144	0.97
6	19	5.5e-06	0.00039	21.7	1.5	1	23	150	172	150	172	0.99
7	19	0.00022	0.015	16.7	3.5	1	23	193	215	193	215	0.96
8	19	0.047	3.3	9.4	0.7	6	23	224	241	224	241	0.97
9	19	0.00079	0.056	15.0	4.4	1	23	247	269	247	269	0.97
10	19	0.014	0.97	11.0	7.4	1	23	274	296	274	296	0.98
11	19	0.0025	0.17	13.4	1.5	1	22	301	322	301	322	0.96
12	19	0.013	0.95	11.1	8.0	1	23	420	442	420	442	0.98
13	19	0.0018	0.13	13.8	2.7	1	23	448	470	448	470	0.99
14	19	0.00024	0.017	16.6	0.3	1	23	476	498	476	498	0.98
15	19	0.00058	0.041	15.4	4.5	1	23	504	526	504	526	0.98
16	19	9.5e-06	0.00067	21.0	1.9	1	23	531	553	531	553	0.98
17	19	5.9e-06	0.00042	21.6	1.9	1	23	559	581	559	581	0.99
18	19	0.0011	0.079	14.5	3.9	1	23	587	609	587	609	0.98
19	19	0.0031	0.22	13.1	2.8	1	23	619	641	619	641	0.97

Sequence Information

Coding Sequence: ATGACGATCCACAGAGCGGAAAGAAAAGACAAATGCGACGTCTGCTCCAAAACCTTCAAGCACTACGGCAGTCTTTCGCGCCACGTGAAGGCGCACAACGCCGATCGAAAAGacaaatgcgagatttgctCGAAGACCTTCAAAAGCCGGCGGAACCTCTTGCTCCACGCCAAAGTGCACAGCGACGAGCGACAGCACGAGTGCAAGCTGTGCTCGAAGCGTTTCAAGCGCAAGTCCGGCCTGGTGCAACACGTCAAAGTGCACGCCGAAGACGAGCGACACGAGTGCGGCGTCTGCGGCAAGGGCTTCAAAGGCGCGCCCAATCTGACGCAGCACATGGTGACGCACTCCGATGAAAGAAATCACAAGTGCGAGTTTTGCTCGAAGAGCTTCAAGCGGAAGCCGCAGCTGACGGACCACATGGCGCTGCACTCGGACGAGAGGGGGTACAAGTGCGAGGTTTGCTCGAAAGGCTTCAAGAGGAAGCAGGACTTGATGCAGCACGTGAAGTCGCACCTCAGGGAGAAGAAACGCAAGTCGAGGTCGGTTGGCACGACCTGCTTCAAAGAAAAGTGTCATAAATGCAGGATTTGTGGCAAGAGTTTTAGAACGAGGCCCAGATTAACGCAACACTTTATTTCGCACCTCCAGGATCAAGATTACAAATGTTGCACCGAGAGTTTTAAGCAAAAAGCCCACTTGTCGGGACACATGGAGCTGCACACTGAGGAGCAAAGTCACCGGTGCGAAATTTGCTCGAAGAGTTTTAGGAGGCTGCACGATATGCTGCAACATGTGAAATTACATGATAAGGGGAGGCACAAGTGCGAGTTGTGCAGCAAAAGTTTCAGATCTCAGAAGTGCAAGTTGGTGCACATGAAATCTCACCGTGTGGGGAAATTTCGATGTGGCGTGTGTTTGAAGGGCTATGTCAGCAAAAAGAAGTTAAAACATCATATGAATAGAATGTGCCGCGATGTGGATCGACAAACCACTGAAGCGGCCGTCAACCAACATGTCGGCGATGCAGACGCCAATAGCCTATTTAATGTAAAGATCAAGCTAGAAAATTTTGACGTCATTGTTCCAGATGACAAAATGGGAACCAATTTCATGACTCGAATCCCGCAGTACGCATACGCCGAAGTGAAAACCGAACAGACGGAAATTTTAAGCATTCGAACCTccgaaaaagaagaaaacgcCGATTTCATCGACCCAAGTACGGATGAACCATCGACTAAATTAGAACAATGtcacaaatgcgacgtttgcggCAAGGATTTCAAGAAACGATGCTACATGCTGCGACACAAAAAGCGACACGCCGACGAAAGAAAgtacaaatgcgacgtttgctcGATGCTATTCACCACGCGGATATACCGAACGAAACACATGAAGACGCACACCGGCGACAGGAACTACCAGTGCGAGCTCTGCCCGTTGACGTTCAAAATGCGACCGACGCTAATGAAACACGCGCTGACGCACACCACCGAAAGAAACcacaaatgcgagatttgcgCCAAGATTTTCAAGACGAAGAAGTGCTTGCAGAGCCACGTGCAGATACACAACGAGCGCGAGCACCAGTGCGAGATTTGCCGCAAGTCGTTCAGCACGAGGAGGTATCTAGCGGTGCACTTGCAGGTGCACGCCGAAGGCAGCAAGTACCGGTGCGAGGTTTGCGACAAGGTTTTTAAAATACGGGGGTGTCTGTGGCAGCACATGAAGACACACAGCGACGAGGGGAGTCACAAGTGCGAGGTTTGCTCGAGGGTTTATAACACGCGAGAGCACATGCTGCAGCACATGGAACGGCACGGCAGCAAAAAAAAGTTCGAGGGAAGTCACAGTTGCAAGGTGTGCTCGCGGCGTTTCAAAAGCATGCGAGCCGTGTCTGCGCACATGAAGTCGCACTCGAAGAAGACGTTTGCGTGGAAGTTGtcgtgtaatttaaaaataggcgGGAAAGACGCTAAACGAATTATTACAGACGAGTCCAAGTTGGTCACAAAGACGGAAAATTTCCAAGataTATCGGAAACTGACATCCATCCAATTCACGAGCAGGTGAAATCCGAACCGACCGAACGTTCAGATTTATTGTACGAATCGAAAGCTTTCAATAGTTGCATTGTGGGGATGAAGACGGAACAGATAGAAACCGTCGACGTAAAACATGAAATGTCAAATATGAATTACGAAGATTTTGCGGCGAATACGAACCGTAGCTTGAAAGGGACATTTTGGGATGTCGATGCAAAGACGGAAGTTGATGAAGTCGGAGATTCCTATAAAAATCATTGTTTCTCCATATTCAGTGATAATTAA
Protein Sequence: MTIHRAERKDKCDVCSKTFKHYGSLSRHVKAHNADRKDKCEICSKTFKSRRNLLLHAKVHSDERQHECKLCSKRFKRKSGLVQHVKVHAEDERHECGVCGKGFKGAPNLTQHMVTHSDERNHKCEFCSKSFKRKPQLTDHMALHSDERGYKCEVCSKGFKRKQDLMQHVKSHLREKKRKSRSVGTTCFKEKCHKCRICGKSFRTRPRLTQHFISHLQDQDYKCCTESFKQKAHLSGHMELHTEEQSHRCEICSKSFRRLHDMLQHVKLHDKGRHKCELCSKSFRSQKCKLVHMKSHRVGKFRCGVCLKGYVSKKKLKHHMNRMCRDVDRQTTEAAVNQHVGDADANSLFNVKIKLENFDVIVPDDKMGTNFMTRIPQYAYAEVKTEQTEILSIRTSEKEENADFIDPSTDEPSTKLEQCHKCDVCGKDFKKRCYMLRHKKRHADERKYKCDVCSMLFTTRIYRTKHMKTHTGDRNYQCELCPLTFKMRPTLMKHALTHTTERNHKCEICAKIFKTKKCLQSHVQIHNEREHQCEICRKSFSTRRYLAVHLQVHAEGSKYRCEVCDKVFKIRGCLWQHMKTHSDEGSHKCEVCSRVYNTREHMLQHMERHGSKKKFEGSHSCKVCSRRFKSMRAVSAHMKSHSKKTFAWKLSCNLKIGGKDAKRIITDESKLVTKTENFQDISETDIHPIHEQVKSEPTERSDLLYESKAFNSCIVGMKTEQIETVDVKHEMSNMNYEDFAANTNRSLKGTFWDVDAKTEVDEVGDSYKNHCFSIFSDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -