Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390740.1:1644154-1645776[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.8e-05 0.0069 17.8 3.1 1 23 14 36 14 36 0.98

2 16 0.0093 0.65 11.6 1.2 1 23 42 64 42 64 0.98

3 16 0.0011 0.079 14.5 4.6 1 23 70 92 70 92 0.98

4 16 0.00014 0.0099 17.3 3.0 1 23 98 120 98 120 0.98

5 16 4.9e-06 0.00034 21.9 0.9 1 23 126 148 126 148 0.99

6 16 2e-05 0.0014 20.0 1.7 1 23 154 176 154 176 0.97

7 16 3.6e-06 0.00026 22.3 1.1 1 23 182 204 182 204 0.98

8 16 3.9e-06 0.00028 22.2 2.3 1 23 210 232 210 232 0.99

9 16 0.0029 0.2 13.2 2.2 1 23 238 260 238 260 0.98

10 16 0.00072 0.051 15.1 0.2 1 23 266 288 266 288 0.98

11 16 5.9e-06 0.00042 21.6 4.7 1 23 294 316 294 316 0.98

12 16 2.4e-05 0.0017 19.7 0.2 1 23 330 352 330 352 0.96

13 16 4.4e-06 0.00031 22.0 4.6 1 23 358 380 358 380 0.99

14 16 2.8e-05 0.002 19.5 2.5 1 23 386 408 386 408 0.98

15 16 0.00094 0.066 14.7 0.2 1 23 414 436 414 436 0.96

16 16 0.00012 0.0081 17.6 4.8 1 23 442 464 442 464 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.8e-05	0.0069	17.8	3.1	1	23	14	36	14	36	0.98
2	16	0.0093	0.65	11.6	1.2	1	23	42	64	42	64	0.98
3	16	0.0011	0.079	14.5	4.6	1	23	70	92	70	92	0.98
4	16	0.00014	0.0099	17.3	3.0	1	23	98	120	98	120	0.98
5	16	4.9e-06	0.00034	21.9	0.9	1	23	126	148	126	148	0.99
6	16	2e-05	0.0014	20.0	1.7	1	23	154	176	154	176	0.97
7	16	3.6e-06	0.00026	22.3	1.1	1	23	182	204	182	204	0.98
8	16	3.9e-06	0.00028	22.2	2.3	1	23	210	232	210	232	0.99
9	16	0.0029	0.2	13.2	2.2	1	23	238	260	238	260	0.98
10	16	0.00072	0.051	15.1	0.2	1	23	266	288	266	288	0.98
11	16	5.9e-06	0.00042	21.6	4.7	1	23	294	316	294	316	0.98
12	16	2.4e-05	0.0017	19.7	0.2	1	23	330	352	330	352	0.96
13	16	4.4e-06	0.00031	22.0	4.6	1	23	358	380	358	380	0.99
14	16	2.8e-05	0.002	19.5	2.5	1	23	386	408	386	408	0.98
15	16	0.00094	0.066	14.7	0.2	1	23	414	436	414	436	0.96
16	16	0.00012	0.0081	17.6	4.8	1	23	442	464	442	464	0.98

Sequence Information

Coding Sequence: ATGTCGAACCACGTGAAAttgcacaccggcgaaagaaaccacaaatgcgaaatttgcgcgaAATCCTTCACCCTGAAGAAATACCTGACCGGACACATGAAATCCCACGCCGgcgacaaaaattacaaatgcgacaTCTGCGCCAATTCCTTCTCGACCAAACAAAGCAAGCTGAACCACGTCAAGttgcacaccggcgaaagaaaccacaagtgcgaaatttgcgacaaacgcTTCACGACGAAACAAATCCTATCGCAACACTTCAAAACGCATTCGATCGAAAGAAACCACAAATGCGAGCTCTGCACGAAATCCTTCATAGTGAAAGAGCGTCTGCTGCGACATCTCAAaacgcacaccggcgagaaAAATTAccaatgcgagatctgcgacAAACGCCTGTCGACGAAAACGACCCTAGCGATGCACCTGAAAACGCACTCGGCCGAAAAGAAccacaaatgcgacgtttgcggCAAGTCGTTCACGACGAGGCAGTACATGTTGGAGCACGTGCGGGCGCACACGAAAAAACGCaactacaagtgcgaaatttgcgacaagTCCTTCACGACGAAGCAATACATGTCGGAGCACGTGCGGGCGCACTCCGGCATAAGAAACTTTAAATGCGAAAGTTGCGGTAAGTGCTACGGGACGAAGAAAAATTTAGCAGTGCATGTAAGgacgcacaccggcgaaaaaaatcacaaatgcgaAACCTGCGGTAATCGCTACGTAACTAAATCGCGATTGGCGATACACGAGAAGAAACACACCGGAGAAAGGAACTACGtgtgcgaaatttgcgacaaacgcTTCGTGTTGAAGAAAATCCTCGCCGTGCACGTCAAAACGCACGCCGGCGTGCGCAaccacaaatgcaaaatttgcgaCAAGCGATTCACGACGAAGCAATACGTTCTGAGACACATGAAGATACACGACGGCGAACGTACCTGCAAAAGTTTCGAACAGAGAAACTACAGGTGCGAAATTTGCGCGAAGCGCTTCGTAACGAAATCCAGTTTGGCTGCGCACGCAGTCAGACACACCGAAGAGAGGAATTACGAGTGCAAAATCTGCGGGAAGTGTTTCGTGACGAAACACGACATGTTGCAGCACGTGAAGACGCACGCCGGCGTGCGGaaccacaaatgtgaaatttgcggcaAGCGCTTGACGACGAAGCGAAGTCTGGAGTTGCACGTGAAGAGGCACAACGGCGAGAGAAATTATAAGTGCGTAGTTTGTGATAAACTGTTCGTCACGAAATACGACATGTTGCAACACGTCGAGGcgcacaccggcgaaaggaATCATcgatgtgaaatttgcaacaaacattttggaacgaaaaaaaattttgcgaTACACGTGAAGACACACACCAAAGGAAATTATAGAAGTGAACCGAAAAATTTGGAAACTCACGtcggagaaataaaaatacctttaGAAGAAAACGACGAGTCTGTTCGAAATTTTTCGTGTAACGTACCGTCTATTACCGCAGAAGAAGTTGGCGTGTTCGATAGGACGTTGATTAAGGACGAACCTGGAATATtcctaaagaaagaaaatgtGGATGGCAACAATGGTAAGAATAACAATGAATAA
Protein Sequence: MSNHVKLHTGERNHKCEICAKSFTLKKYLTGHMKSHAGDKNYKCDICANSFSTKQSKLNHVKLHTGERNHKCEICDKRFTTKQILSQHFKTHSIERNHKCELCTKSFIVKERLLRHLKTHTGEKNYQCEICDKRLSTKTTLAMHLKTHSAEKNHKCDVCGKSFTTRQYMLEHVRAHTKKRNYKCEICDKSFTTKQYMSEHVRAHSGIRNFKCESCGKCYGTKKNLAVHVRTHTGEKNHKCETCGNRYVTKSRLAIHEKKHTGERNYVCEICDKRFVLKKILAVHVKTHAGVRNHKCKICDKRFTTKQYVLRHMKIHDGERTCKSFEQRNYRCEICAKRFVTKSSLAAHAVRHTEERNYECKICGKCFVTKHDMLQHVKTHAGVRNHKCEICGKRLTTKRSLELHVKRHNGERNYKCVVCDKLFVTKYDMLQHVEAHTGERNHRCEICNKHFGTKKNFAIHVKTHTKGNYRSEPKNLETHVGEIKIPLEENDESVRNFSCNVPSITAEEVGVFDRTLIKDEPGIFLKKENVDGNNGKNNNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -